RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 PSMA7O14818 248 aa13.16□□□□□ -0.3
VPS13A-205ENST00000376636 SYKP43405 635 aa13.16□□□□□ -0.3
VPS13A-205ENST00000376636 MAP3K21Q5TCX8 1036 aa13.16□□□□□ -0.3
VPS13A-205ENST00000376636 NCBP1Q09161 790 aaKnown RBP13.16□□□□□ -0.3
VPS13A-205ENST00000376636 CCDC26Q8TAB7 109 aa13.16□□□□□ -0.3
VPS13A-205ENST00000376636 CABP2Q9NPB3 220 aa13.16□□□□□ -0.3
VPS13A-205ENST00000376636 ARHGAP5Q13017 1502 aa13.16□□□□□ -0.3
VPS13A-205ENST00000376636 NBPF7P0C2Y1 421 aaPredicted RBP13.16□□□□□ -0.3
VPS13A-205ENST00000376636 ERCC5P28715 1186 aaPredicted RBP13.16□□□□□ -0.3
VPS13A-205ENST00000376636 IFIT3O14879 490 aaKnown RBP13.16□□□□□ -0.3
VPS13A-205ENST00000376636 TNPO1Q92973 898 aaKnown RBP13.16□□□□□ -0.3
VPS13A-205ENST00000376636 DNAI1Q9UI46 699 aa13.16□□□□□ -0.3
VPS13A-205ENST00000376636 SLC5A1P13866 664 aa13.15□□□□□ -0.3
VPS13A-205ENST00000376636 PPP2R1AP30153 589 aa13.15□□□□□ -0.3
VPS13A-205ENST00000376636 DNAJC8O75937 253 aaPredicted RBP13.15□□□□□ -0.3
VPS13A-205ENST00000376636 CROCCP2Q86T23 111 aa13.15□□□□□ -0.3
VPS13A-205ENST00000376636 SYT1P21579 422 aa13.15□□□□□ -0.3
VPS13A-205ENST00000376636 KLHL40Q2TBA0 621 aa13.15□□□□□ -0.3
VPS13A-205ENST00000376636 NBPF8Q3BBV2 869 aa13.15□□□□□ -0.3
VPS13A-205ENST00000376636 MIER3Q7Z3K6 550 aa13.15□□□□□ -0.3
VPS13A-205ENST00000376636 UBLCP1Q8WVY7 318 aaPredicted RBP13.15□□□□□ -0.3
VPS13A-205ENST00000376636 TSR2Q969E8 191 aaKnown RBP13.15□□□□□ -0.3
VPS13A-205ENST00000376636 RNF10Q8N5U6 811 aaKnown RBP13.15□□□□□ -0.3
VPS13A-205ENST00000376636 RNF216Q9NWF9 866 aaPredicted RBP13.15□□□□□ -0.3
VPS13A-205ENST00000376636 RAB11FIP4Q86YS3 637 aa13.15□□□□□ -0.3
VPS13A-205ENST00000376636 HAUS8Q9BT25 410 aa13.15□□□□□ -0.3
VPS13A-205ENST00000376636 CUL4BQ13620 913 aa13.15□□□□□ -0.3
VPS13A-205ENST00000376636 GJB2P29033 226 aa13.15□□□□□ -0.31
VPS13A-205ENST00000376636 SEL1L2Q5TEA6 688 aa13.15□□□□□ -0.31
VPS13A-205ENST00000376636 ZNF530Q6P9A1 599 aaPredicted RBP13.15□□□□□ -0.31
VPS13A-205ENST00000376636 ACTN4O43707 911 aaKnown RBP13.14□□□□□ -0.31
VPS13A-205ENST00000376636 CCDC117Q8IWD4 279 aaPredicted RBP13.14□□□□□ -0.31
VPS13A-205ENST00000376636 AFAP1L1Q8TED9 768 aa13.14□□□□□ -0.31
VPS13A-205ENST00000376636 ZMAT2Q96NC0 199 aaKnown RBP13.14□□□□□ -0.31
VPS13A-205ENST00000376636 MRVI1Q9Y6F6 885 aa13.14□□□□□ -0.31
VPS13A-205ENST00000376636 IARSP41252 1262 aaKnown RBP13.14□□□□□ -0.31
VPS13A-205ENST00000376636 NOLC1Q14978 699 aaKnown RBP eCLIP13.14□□□□□ -0.31
VPS13A-205ENST00000376636 CCDC89Q8N998 374 aa13.14□□□□□ -0.31
VPS13A-205ENST00000376636 UTP11Q9Y3A2 253 aaKnown RBP13.14□□□□□ -0.31
VPS13A-205ENST00000376636 ZNF692Q9BU19 519 aaPredicted RBP13.14□□□□□ -0.31
VPS13A-205ENST00000376636 OGFRQ9NZT2 677 aa13.14□□□□□ -0.31
VPS13A-205ENST00000376636 ARHGEF2Q92974 986 aaKnown RBP13.14□□□□□ -0.31
VPS13A-205ENST00000376636 HAUS7Q99871 368 aa13.14□□□□□ -0.31
VPS13A-205ENST00000376636 METAP2P50579 478 aaKnown RBP eCLIP13.14□□□□□ -0.31
VPS13A-205ENST00000376636 ZSCAN23Q3MJ62 389 aa13.14□□□□□ -0.31
VPS13A-205ENST00000376636 WIZO95785 1651 aa13.14□□□□□ -0.31
VPS13A-205ENST00000376636 I3L4J1 428 aa13.14□□□□□ -0.31
VPS13A-205ENST00000376636 RILPL1Q5EBL4 403 aa13.14□□□□□ -0.31
VPS13A-205ENST00000376636 TRIM35Q9UPQ4 493 aa13.14□□□□□ -0.31
VPS13A-205ENST00000376636 WDR78Q5VTH9 848 aa13.14□□□□□ -0.31
VPS13A-205ENST00000376636 TOP2AP11388 1531 aaKnown RBP13.13□□□□□ -0.31
VPS13A-205ENST00000376636 CCDC25Q86WR0 208 aa13.13□□□□□ -0.31
VPS13A-205ENST00000376636 CCDC42Q96M95 316 aa13.13□□□□□ -0.31
VPS13A-205ENST00000376636 HS1BP3Q53T59 392 aa13.13□□□□□ -0.31
VPS13A-205ENST00000376636 TOM1L2Q6ZVM7 507 aa13.13□□□□□ -0.31
VPS13A-205ENST00000376636 KAT14Q9H8E8 782 aa13.13□□□□□ -0.31
VPS13A-205ENST00000376636 MMRN2Q9H8L6 949 aa13.13□□□□□ -0.31
VPS13A-205ENST00000376636 FAM200AQ8TCP9 573 aa13.13□□□□□ -0.31
VPS13A-205ENST00000376636 IFT81Q8WYA0 676 aa13.13□□□□□ -0.31
VPS13A-205ENST00000376636 EVI5LQ96CN4 794 aa13.13□□□□□ -0.31
VPS13A-205ENST00000376636 ZPR1O75312 459 aa13.13□□□□□ -0.31
VPS13A-205ENST00000376636 PPFIA1Q13136 1202 aa13.13□□□□□ -0.31
VPS13A-205ENST00000376636 ESCO1Q5FWF5 840 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 KRBA2Q6ZNG9 492 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 GSDMBQ8TAX9 411 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 BAG3O95817 575 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 IFIT5Q13325 482 aaKnown RBP13.12□□□□□ -0.31
VPS13A-205ENST00000376636 STK10O94804 968 aaKnown RBP13.12□□□□□ -0.31
VPS13A-205ENST00000376636 MFSD6Q6ZSS7 791 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 GBP5Q96PP8 586 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 MYCNP04198 464 aaPredicted RBP13.12□□□□□ -0.31
VPS13A-205ENST00000376636 INPP5BP32019 993 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 CA8P35219 290 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 Q9H521 79 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 IL1RAPL2Q9NP60 686 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 HLA-DOAP06340 250 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 CLCN1P35523 988 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 ITIH3Q06033 890 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 TMEM67Q5HYA8 995 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 NEK11Q8NG66 645 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 E7EVH7 732 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 ANO6Q4KMQ2 910 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 SULT6B1Q6IMI4 303 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 CDCA7LQ96GN5 454 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 INPP1P49441 399 aa13.12□□□□□ -0.31
VPS13A-205ENST00000376636 SMIM23A6NLE4 172 aa13.11□□□□□ -0.31
VPS13A-205ENST00000376636 GUCY1B3Q02153 619 aa13.11□□□□□ -0.31
VPS13A-205ENST00000376636 TUBB2AQ13885 445 aa13.11□□□□□ -0.31
VPS13A-205ENST00000376636 SEPT8Q92599 483 aa13.11□□□□□ -0.31
VPS13A-205ENST00000376636 TUBB2BQ9BVA1 445 aa13.11□□□□□ -0.31
VPS13A-205ENST00000376636 PLCB1Q9NQ66 1216 aa13.11□□□□□ -0.31
VPS13A-205ENST00000376636 RRAGBQ5VZM2 374 aa13.11□□□□□ -0.31
VPS13A-205ENST00000376636 DACT3Q96B18 629 aaPredicted RBP13.11□□□□□ -0.31
VPS13A-205ENST00000376636 CCDC65Q8IXS2 484 aa13.11□□□□□ -0.31
VPS13A-205ENST00000376636 KIFAP3Q92845 792 aa13.11□□□□□ -0.31
VPS13A-205ENST00000376636 GNAT3A8MTJ3 354 aa13.11□□□□□ -0.31
VPS13A-205ENST00000376636 NDUFAB1O14561 156 aa13.11□□□□□ -0.31
VPS13A-205ENST00000376636 TTLL12Q14166 644 aaPredicted RBP13.11□□□□□ -0.31
VPS13A-205ENST00000376636 LUC7L3O95232 432 aaKnown RBP13.1□□□□□ -0.31
VPS13A-205ENST00000376636 CNGA4Q8IV77 575 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms