RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 SLX4Q8IY92 1834 aa17.43■□□□□ 0.38
HMGA1-203ENST00000374116 NPR1P16066 1061 aa17.43■□□□□ 0.38
HMGA1-203ENST00000374116 KLHDC4Q8TBB5 520 aa17.43■□□□□ 0.38
HMGA1-203ENST00000374116 PLA2G12BQ9BX93 195 aa17.43■□□□□ 0.38
HMGA1-203ENST00000374116 ZMYND15Q9H091 742 aa17.43■□□□□ 0.38
HMGA1-203ENST00000374116 PIM2Q9P1W9 311 aa17.43■□□□□ 0.38
HMGA1-203ENST00000374116 BRCA1P38398 1863 aaKnown RBP17.43■□□□□ 0.38
HMGA1-203ENST00000374116 ATP8B2P98198 1209 aa17.42■□□□□ 0.38
HMGA1-203ENST00000374116 CCDC152Q4G0S7 254 aa17.42■□□□□ 0.38
HMGA1-203ENST00000374116 DDX46Q7L014 1031 aaKnown RBP17.42■□□□□ 0.38
HMGA1-203ENST00000374116 ZNF594Q96JF6 807 aaPredicted RBP17.42■□□□□ 0.38
HMGA1-203ENST00000374116 DLEC1Q9Y238 1755 aa17.42■□□□□ 0.38
HMGA1-203ENST00000374116 RIC1Q4ADV7 1423 aa17.42■□□□□ 0.38
HMGA1-203ENST00000374116 CSF1RP07333 972 aa17.42■□□□□ 0.38
HMGA1-203ENST00000374116 ITGA6P23229 1130 aa17.42■□□□□ 0.38
HMGA1-203ENST00000374116 PRPF40BQ6NWY9 871 aaKnown RBP17.42■□□□□ 0.38
HMGA1-203ENST00000374116 RBM17Q96I25 401 aaKnown RBP17.42■□□□□ 0.38
HMGA1-203ENST00000374116 ANTXR1Q9H6X2 564 aa17.42■□□□□ 0.38
HMGA1-203ENST00000374116 SPEF2Q9C093 1822 aa17.41■□□□□ 0.38
HMGA1-203ENST00000374116 CDC45O75419 566 aa17.41■□□□□ 0.38
HMGA1-203ENST00000374116 TTLL6Q8N841 843 aa17.41■□□□□ 0.38
HMGA1-203ENST00000374116 FSD2A1L4K1 749 aa17.4■□□□□ 0.38
HMGA1-203ENST00000374116 C21orf2O43822 256 aa17.4■□□□□ 0.38
HMGA1-203ENST00000374116 YBX3P16989 372 aaKnown RBP eCLIP17.4■□□□□ 0.384e-36■□□□□ 8.1
HMGA1-203ENST00000374116 STYK1Q6J9G0 422 aa17.4■□□□□ 0.38
HMGA1-203ENST00000374116 TBC1D9Q6ZT07 1266 aa17.4■□□□□ 0.38
HMGA1-203ENST00000374116 HSP90B1P14625 803 aaKnown RBP17.4■□□□□ 0.38
HMGA1-203ENST00000374116 GSPT1P15170 499 aaKnown RBP17.4■□□□□ 0.38
HMGA1-203ENST00000374116 HOXA10P31260 410 aaPredicted RBP17.4■□□□□ 0.38
HMGA1-203ENST00000374116 DALRD3Q5D0E6 543 aaKnown RBP17.4■□□□□ 0.38
HMGA1-203ENST00000374116 TTC22Q5TAA0 569 aa17.4■□□□□ 0.38
HMGA1-203ENST00000374116 C16orf71Q8IYS4 520 aaPredicted RBP17.4■□□□□ 0.38
HMGA1-203ENST00000374116 PNMA6EA0A0J9YXQ4 647 aa17.39■□□□□ 0.37
HMGA1-203ENST00000374116 RABL6Q3YEC7 729 aaPredicted RBP17.39■□□□□ 0.37
HMGA1-203ENST00000374116 SLKQ9H2G2 1235 aaPredicted RBP17.39■□□□□ 0.37
HMGA1-203ENST00000374116 IFIT5Q13325 482 aaKnown RBP17.38■□□□□ 0.37
HMGA1-203ENST00000374116 GRAPQ13588 217 aa17.38■□□□□ 0.37
HMGA1-203ENST00000374116 HSP90AA2PQ14568 343 aaPredicted RBP17.38■□□□□ 0.37
HMGA1-203ENST00000374116 GPR162Q16538 588 aa17.38■□□□□ 0.37
HMGA1-203ENST00000374116 GRAPLQ8TC17 118 aaPredicted RBP17.38■□□□□ 0.37
HMGA1-203ENST00000374116 CNKSR1Q969H4 720 aa17.38■□□□□ 0.37
HMGA1-203ENST00000374116 SNX21Q969T3 373 aa17.38■□□□□ 0.37
HMGA1-203ENST00000374116 CRAMP1Q96RY5 1269 aa17.38■□□□□ 0.37
HMGA1-203ENST00000374116 HSP90AA1P07900 732 aaKnown RBP17.37■□□□□ 0.37
HMGA1-203ENST00000374116 ALDH1B1P30837 517 aa17.37■□□□□ 0.37
HMGA1-203ENST00000374116 CCDC57Q2TAC2 916 aa17.37■□□□□ 0.37
HMGA1-203ENST00000374116 HSCBQ8IWL3 235 aa17.37■□□□□ 0.37
HMGA1-203ENST00000374116 OTUD7AQ8TE49 926 aaPredicted RBP17.37■□□□□ 0.37
HMGA1-203ENST00000374116 PA2G4Q9UQ80 394 aaKnown RBP17.37■□□□□ 0.37
HMGA1-203ENST00000374116 ANKRD18BA2A2Z9 1011 aa17.37■□□□□ 0.37
HMGA1-203ENST00000374116 PPEF1O14829 653 aaPredicted RBP17.37■□□□□ 0.37
HMGA1-203ENST00000374116 SRGAP3O43295 1099 aa17.37■□□□□ 0.37
HMGA1-203ENST00000374116 SMARCA5O60264 1052 aaPredicted RBP17.37■□□□□ 0.37
HMGA1-203ENST00000374116 RPS8P62241 208 aaKnown RBP17.37■□□□□ 0.37
HMGA1-203ENST00000374116 SSH3Q8TE77 659 aa17.37■□□□□ 0.37
HMGA1-203ENST00000374116 OSBPL3Q9H4L5 887 aa17.37■□□□□ 0.37
HMGA1-203ENST00000374116 POLA2Q14181 598 aa17.36■□□□□ 0.37
HMGA1-203ENST00000374116 ANKRD18AQ8IVF6 992 aa17.36■□□□□ 0.37
HMGA1-203ENST00000374116 PUS3Q9BZE2 481 aaKnown RBP17.36■□□□□ 0.37
HMGA1-203ENST00000374116 SIL1Q9H173 461 aa17.36■□□□□ 0.37
HMGA1-203ENST00000374116 SALL3Q9BXA9 1300 aa17.36■□□□□ 0.37
HMGA1-203ENST00000374116 WTIPA6NIX2 430 aaPredicted RBP17.35■□□□□ 0.37
HMGA1-203ENST00000374116 TAF7LQ5H9L4 462 aa17.35■□□□□ 0.37
HMGA1-203ENST00000374116 RFX5P48382 616 aaPredicted RBP17.35■□□□□ 0.37
HMGA1-203ENST00000374116 CDC5LQ99459 802 aaKnown RBP17.35■□□□□ 0.37
HMGA1-203ENST00000374116 LRRC24Q50LG9 513 aa17.34■□□□□ 0.37
HMGA1-203ENST00000374116 C7orf43Q8WVR3 580 aa17.34■□□□□ 0.37
HMGA1-203ENST00000374116 MPHOSPH8Q99549 860 aa17.34■□□□□ 0.37
HMGA1-203ENST00000374116 IGHMBP2P38935 993 aaKnown RBP17.33■□□□□ 0.37
HMGA1-203ENST00000374116 LDHAL6AQ6ZMR3 332 aa17.33■□□□□ 0.37
HMGA1-203ENST00000374116 HELBQ8NG08 1087 aaPredicted RBP17.33■□□□□ 0.37
HMGA1-203ENST00000374116 EXOC6BQ9Y2D4 811 aa17.33■□□□□ 0.37
HMGA1-203ENST00000374116 RTL9Q8NET4 1388 aa17.33■□□□□ 0.36
HMGA1-203ENST00000374116 SNAP23O00161 211 aa17.33■□□□□ 0.36
HMGA1-203ENST00000374116 BBOX1O75936 387 aa17.33■□□□□ 0.36
HMGA1-203ENST00000374116 PTPN12Q05209 780 aaKnown RBP17.33■□□□□ 0.36
HMGA1-203ENST00000374116 ISY1Q9ULR0 285 aaKnown RBP17.33■□□□□ 0.36
HMGA1-203ENST00000374116 HDAC5Q9UQL6 1122 aa17.33■□□□□ 0.36
HMGA1-203ENST00000374116 MTX1Q13505 466 aa17.32■□□□□ 0.36
HMGA1-203ENST00000374116 CASC1Q6TDU7 716 aa17.32■□□□□ 0.36
HMGA1-203ENST00000374116 ARHGAP27Q6ZUM4 889 aa17.32■□□□□ 0.36
HMGA1-203ENST00000374116 NAP1L5Q96NT1 182 aaPredicted RBP17.32■□□□□ 0.36
HMGA1-203ENST00000374116 KIF2CQ99661 725 aa17.32■□□□□ 0.36
HMGA1-203ENST00000374116 LRRCC1Q9C099 1032 aa17.32■□□□□ 0.36
HMGA1-203ENST00000374116 CNNM1Q9NRU3 951 aa17.32■□□□□ 0.36
HMGA1-203ENST00000374116 CHMP5Q9NZZ3 219 aa17.32■□□□□ 0.36
HMGA1-203ENST00000374116 ATP6V0A2Q9Y487 856 aa17.32■□□□□ 0.36
HMGA1-203ENST00000374116 ARFGEF1Q9Y6D6 1849 aa17.31■□□□□ 0.36
HMGA1-203ENST00000374116 APBB1O00213 710 aa17.31■□□□□ 0.36
HMGA1-203ENST00000374116 TAF5LO75529 589 aa17.31■□□□□ 0.36
HMGA1-203ENST00000374116 PDE1AP54750 535 aa17.31■□□□□ 0.36
HMGA1-203ENST00000374116 RASSF7Q02833 373 aa17.31■□□□□ 0.36
HMGA1-203ENST00000374116 GPR101Q96P66 508 aaPredicted RBP17.31■□□□□ 0.36
HMGA1-203ENST00000374116 BSDC1Q9NW68 430 aaPredicted RBP17.31■□□□□ 0.36
HMGA1-203ENST00000374116 NSFL1CQ9UNZ2 370 aaKnown RBP17.31■□□□□ 0.36
HMGA1-203ENST00000374116 XRCC6P12956 609 aaKnown RBP eCLIP17.31■□□□□ 0.36
HMGA1-203ENST00000374116 GPSM2P81274 684 aa17.31■□□□□ 0.36
HMGA1-203ENST00000374116 MINPP1Q9UNW1 487 aa17.31■□□□□ 0.36
HMGA1-203ENST00000374116 GOLGA6L3A6NEY3 463 aa17.3■□□□□ 0.36
HMGA1-203ENST00000374116 SDSP20132 328 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms