RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 BMP15O95972 392 aa13.12□□□□□ -0.31
PTPRF-203ENST00000372407 UBASH3AP57075 661 aa13.12□□□□□ -0.31
PTPRF-203ENST00000372407 PDE4BQ07343 736 aa13.12□□□□□ -0.31
PTPRF-203ENST00000372407 CETN1Q12798 172 aa13.12□□□□□ -0.31
PTPRF-203ENST00000372407 HLTFQ14527 1009 aaKnown RBP eCLIP13.12□□□□□ -0.31
PTPRF-203ENST00000372407 CCDC178Q5BJE1 867 aa13.12□□□□□ -0.31
PTPRF-203ENST00000372407 MRPS27Q92552 414 aaKnown RBP13.12□□□□□ -0.31
PTPRF-203ENST00000372407 TRPM2O94759 1503 aa13.12□□□□□ -0.31
PTPRF-203ENST00000372407 CCDC40Q4G0X9 1142 aa13.12□□□□□ -0.31
PTPRF-203ENST00000372407 FAM114A1Q8IWE2 563 aa13.12□□□□□ -0.31
PTPRF-203ENST00000372407 ORAI2Q96SN7 254 aa13.12□□□□□ -0.31
PTPRF-203ENST00000372407 ZBTB43O43298 467 aa13.12□□□□□ -0.31
PTPRF-203ENST00000372407 F13A1P00488 732 aa13.12□□□□□ -0.31
PTPRF-203ENST00000372407 ANO6Q4KMQ2 910 aa13.12□□□□□ -0.31
PTPRF-203ENST00000372407 RAB11FIP4Q86YS3 637 aa13.12□□□□□ -0.31
PTPRF-203ENST00000372407 TMTC2Q8N394 836 aa13.12□□□□□ -0.31
PTPRF-203ENST00000372407 ASXL1Q8IXJ9 1541 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 GRM8O00222 908 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 SPAG1Q07617 926 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 AKR1B10O60218 316 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 RLBP1P12271 317 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 GTF2F1P35269 517 aaKnown RBP eCLIP13.11□□□□□ -0.31
PTPRF-203ENST00000372407 CHPF2Q9P2E5 772 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 ERVK-7P63135 1459 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 VAMP4O75379 141 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 RAB3GAP1Q15042 981 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 TCERG1LQ5VWI1 586 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 C16orf71Q8IYS4 520 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-203ENST00000372407 EHBP1Q8NDI1 1231 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 ANKRD24Q8TF21 1146 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 CUL5Q93034 780 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.11□□□□□ -0.31
PTPRF-203ENST00000372407 TMX1Q9H3N1 280 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 TMEM94Q12767 1356 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 DNM1Q05193 864 aaKnown RBP13.11□□□□□ -0.31
PTPRF-203ENST00000372407 MCMDC2Q4G0Z9 681 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 ALG1Q9BT22 464 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 LRRC2Q9BYS8 371 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 ZBTB40Q9NUA8 1239 aa13.11□□□□□ -0.31
PTPRF-203ENST00000372407 BAG3O95817 575 aa13.1□□□□□ -0.31
PTPRF-203ENST00000372407 WTAPQ15007 396 aa13.1□□□□□ -0.31
PTPRF-203ENST00000372407 MICALCLQ6ZW33 695 aa13.1□□□□□ -0.31
PTPRF-203ENST00000372407 ZNF830Q96NB3 372 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-203ENST00000372407 ZSWIM4Q9H7M6 989 aa13.1□□□□□ -0.31
PTPRF-203ENST00000372407 TMCO5BA8MYB1 307 aa13.1□□□□□ -0.31
PTPRF-203ENST00000372407 PRIM1P49642 420 aaKnown RBP13.1□□□□□ -0.31
PTPRF-203ENST00000372407 HS1BP3Q53T59 392 aa13.1□□□□□ -0.31
PTPRF-203ENST00000372407 KSR2Q6VAB6 950 aa13.1□□□□□ -0.31
PTPRF-203ENST00000372407 COPS6Q7L5N1 327 aa13.1□□□□□ -0.31
PTPRF-203ENST00000372407 PUS7Q96PZ0 661 aaKnown RBP13.1□□□□□ -0.31
PTPRF-203ENST00000372407 TAOK3Q9H2K8 898 aa13.1□□□□□ -0.31
PTPRF-203ENST00000372407 KAT14Q9H8E8 782 aa13.1□□□□□ -0.31
PTPRF-203ENST00000372407 PLEKHG1Q9ULL1 1385 aa13.1□□□□□ -0.31
PTPRF-203ENST00000372407 CCDC91Q7Z6B0 441 aa13.1□□□□□ -0.31
PTPRF-203ENST00000372407 INTS4Q96HW7 963 aaKnown RBP13.1□□□□□ -0.31
PTPRF-203ENST00000372407 SMC1AQ14683 1233 aaKnown RBP13.09□□□□□ -0.31
PTPRF-203ENST00000372407 LINS1Q8NG48 757 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 XAGE3Q8WTP9 111 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 JARID2Q92833 1246 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-203ENST00000372407 TRIM47Q96LD4 638 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 DHX37Q8IY37 1157 aaKnown RBP13.09□□□□□ -0.31
PTPRF-203ENST00000372407 TTC12Q9H892 705 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-203ENST00000372407 RMND1Q9NWS8 449 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 NOP2P46087 812 aaKnown RBP13.09□□□□□ -0.31
PTPRF-203ENST00000372407 CTR9Q6PD62 1173 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 LMBR1LQ6UX01 489 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 KRT222Q8N1A0 295 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 TESK2Q96S53 571 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 KRT23Q9C075 422 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 LRRC27Q9C0I9 530 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 JADE2Q9NQC1 790 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 POLKQ9UBT6 870 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 GCOM1H8Y6P7 765 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-203ENST00000372407 TUBB4AP04350 444 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 MYZAPP0CAP1 466 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 IL15P40933 162 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-203ENST00000372407 ATP2B3Q16720 1220 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 KRI1Q8N9T8 703 aaKnown RBP13.09□□□□□ -0.31
PTPRF-203ENST00000372407 ARFGAP3Q9NP61 516 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 DNAI1Q9UI46 699 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 TNNQ9UQP3 1299 aa13.09□□□□□ -0.31
PTPRF-203ENST00000372407 CCDC175P0C221 793 aa13.08□□□□□ -0.31
PTPRF-203ENST00000372407 TRIM21P19474 475 aaKnown RBP13.08□□□□□ -0.31
PTPRF-203ENST00000372407 CTAGE1Q96RT6 745 aa13.08□□□□□ -0.31
PTPRF-203ENST00000372407 DNAJC25Q9H1X3 360 aa13.08□□□□□ -0.31
PTPRF-203ENST00000372407 EIF2AK4Q9P2K8 1649 aaKnown RBP13.08□□□□□ -0.32
PTPRF-203ENST00000372407 MACROD2A1Z1Q3 448 aa13.08□□□□□ -0.32
PTPRF-203ENST00000372407 SPDYE4A6NLX3 237 aa13.08□□□□□ -0.32
PTPRF-203ENST00000372407 HOOK3Q86VS8 718 aa13.08□□□□□ -0.32
PTPRF-203ENST00000372407 TTC41PQ6P2S7 1318 aa13.08□□□□□ -0.32
PTPRF-203ENST00000372407 CDC42BPAQ5VT25 1732 aa13.08□□□□□ -0.32
PTPRF-203ENST00000372407 SPTY2D1Q68D10 685 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-203ENST00000372407 CEP85Q6P2H3 762 aa13.08□□□□□ -0.32
PTPRF-203ENST00000372407 Q6ZUG5 572 aa13.08□□□□□ -0.32
PTPRF-203ENST00000372407 ESR2Q92731 530 aa13.08□□□□□ -0.32
PTPRF-203ENST00000372407 CNNM2Q9H8M5 875 aa13.08□□□□□ -0.32
PTPRF-203ENST00000372407 VAT1LQ9HCJ6 419 aa13.08□□□□□ -0.32
PTPRF-203ENST00000372407 BCCIPQ9P287 314 aaKnown RBP eCLIP13.08□□□□□ -0.32
PTPRF-203ENST00000372407 STX8Q9UNK0 236 aa13.08□□□□□ -0.32
PTPRF-203ENST00000372407 ZNF335Q9H4Z2 1342 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms