RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 ATP7AQ04656 1500 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 CADPS2Q86UW7 1296 aa11.6□□□□□ -0.55
CLIP1-202ENST00000358808 GPATCH11Q8N954 259 aa11.6□□□□□ -0.55
CLIP1-202ENST00000358808 TSPY3P0CV98 308 aa11.6□□□□□ -0.55
CLIP1-202ENST00000358808 TSPY8P0CW00 308 aa11.6□□□□□ -0.55
CLIP1-202ENST00000358808 CCDC183Q5T5S1 534 aa11.6□□□□□ -0.55
CLIP1-202ENST00000358808 RPAP2Q8IXW5 612 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-202ENST00000358808 PPP1R9BQ96SB3 815 aa11.6□□□□□ -0.55
CLIP1-202ENST00000358808 SMARCA5O60264 1052 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-202ENST00000358808 SPAG5Q96R06 1193 aa11.6□□□□□ -0.55
CLIP1-202ENST00000358808 WASLO00401 505 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-202ENST00000358808 GAS8O95995 478 aa11.6□□□□□ -0.55
CLIP1-202ENST00000358808 PLCB3Q01970 1234 aa11.6□□□□□ -0.55
CLIP1-202ENST00000358808 RBM26Q5T8P6 1007 aaKnown RBP11.6□□□□□ -0.55
CLIP1-202ENST00000358808 MFSD6Q6ZSS7 791 aa11.6□□□□□ -0.55
CLIP1-202ENST00000358808 CCDC77Q9BR77 488 aa11.6□□□□□ -0.55
CLIP1-202ENST00000358808 CRNKL1Q9BZJ0 848 aaKnown RBP11.6□□□□□ -0.55
CLIP1-202ENST00000358808 ZMYM3Q14202 1370 aa11.6□□□□□ -0.55
CLIP1-202ENST00000358808 ATP2A1O14983 1001 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 CTAGE5O15320 804 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 IARSP41252 1262 aaKnown RBP11.59□□□□□ -0.55
CLIP1-202ENST00000358808 SATB1Q01826 763 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 PICALMQ13492 652 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 AKNAD1Q5T1N1 836 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 OGFOD1Q8N543 542 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 SMARCC2Q8TAQ2 1214 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 MYO5CQ9NQX4 1742 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 SLC26A6Q9BXS9 759 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 VEZTQ9HBM0 779 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 WWC3Q9ULE0 1092 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 ZCCHC11Q5TAX3 1644 aaKnown RBP11.59□□□□□ -0.55
CLIP1-202ENST00000358808 CALM1P0DP23 149 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 CALM2P0DP24 149 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 CALM3P0DP25 149 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 TMPOP42166 694 aaKnown RBP11.59□□□□□ -0.55
CLIP1-202ENST00000358808 CFAP157Q5JU67 520 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 PPP1R42Q7Z4L9 355 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 TEX13AQ9BXU3 409 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-202ENST00000358808 NBPF8Q3BBV2 869 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 ISM2Q6H9L7 571 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-202ENST00000358808 ZBTB3Q9H5J0 574 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 NOS1P29475 1434 aa11.59□□□□□ -0.55
CLIP1-202ENST00000358808 AKR1B10O60218 316 aa11.58□□□□□ -0.55
CLIP1-202ENST00000358808 KIF5AQ12840 1032 aa11.58□□□□□ -0.55
CLIP1-202ENST00000358808 RASA3Q14644 834 aa11.58□□□□□ -0.55
CLIP1-202ENST00000358808 RAB11FIP4Q86YS3 637 aa11.58□□□□□ -0.55
CLIP1-202ENST00000358808 TRERF1Q96PN7 1200 aa11.58□□□□□ -0.55
CLIP1-202ENST00000358808 SH2B1Q9NRF2 756 aaPredicted RBP11.58□□□□□ -0.55
CLIP1-202ENST00000358808 RIMS2Q9UQ26 1411 aa11.58□□□□□ -0.55
CLIP1-202ENST00000358808 NOD1Q9Y239 953 aa11.58□□□□□ -0.55
CLIP1-202ENST00000358808 TTC36A6NLP5 189 aa11.58□□□□□ -0.56
CLIP1-202ENST00000358808 GEN1Q17RS7 908 aa11.58□□□□□ -0.56
CLIP1-202ENST00000358808 MSANTD4Q8NCY6 345 aa11.58□□□□□ -0.56
CLIP1-202ENST00000358808 CGNQ9P2M7 1197 aaKnown RBP11.58□□□□□ -0.56
CLIP1-202ENST00000358808 ABCA8O94911 1581 aa11.58□□□□□ -0.56
CLIP1-202ENST00000358808 STX8Q9UNK0 236 aa11.58□□□□□ -0.56
CLIP1-202ENST00000358808 TRAF1Q13077 416 aa11.58□□□□□ -0.56
CLIP1-202ENST00000358808 NBPF6Q5VWK0 638 aa11.58□□□□□ -0.56
CLIP1-202ENST00000358808 NBPF5PQ86XG9 351 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-202ENST00000358808 NBPF4Q96M43 638 aa11.58□□□□□ -0.56
CLIP1-202ENST00000358808 C8orf37Q96NL8 207 aa11.58□□□□□ -0.56
CLIP1-202ENST00000358808 SELENOOQ9BVL4 669 aa11.58□□□□□ -0.56
CLIP1-202ENST00000358808 GOLIM4O00461 696 aa11.58□□□□□ -0.56
CLIP1-202ENST00000358808 METAP2P50579 478 aaKnown RBP eCLIP11.58□□□□□ -0.56
CLIP1-202ENST00000358808 USP16Q9Y5T5 823 aa11.58□□□□□ -0.56
CLIP1-202ENST00000358808 TCOF1Q13428 1488 aaKnown RBP11.57□□□□□ -0.56
CLIP1-202ENST00000358808 HSPA4P34932 840 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 ZSCAN30Q86W11 494 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 MICU3Q86XE3 530 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 EHBP1Q8NDI1 1231 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 PRDM10Q9NQV6 1147 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 RMND1Q9NWS8 449 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 HYPKQ9NX55 129 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 TSPOAP1O95153 1857 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 PRPHP41219 470 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 RRAGBQ5VZM2 374 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 IFNL2Q8IZJ0 200 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 ZBTB24O43167 697 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-202ENST00000358808 LPXNO60711 386 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 GTF2F1P35269 517 aaKnown RBP eCLIP11.57□□□□□ -0.56
CLIP1-202ENST00000358808 HEATR3Q7Z4Q2 680 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 RNF34Q969K3 372 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 POLD1P28340 1107 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 CUL4BQ13620 913 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 KANK3Q6NY19 840 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 SRRTQ9BXP5 876 aaKnown RBP11.57□□□□□ -0.56
CLIP1-202ENST00000358808 ZBTB21Q9ULJ3 1066 aa11.57□□□□□ -0.56
CLIP1-202ENST00000358808 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.57□□□□□ -0.561e-6■■■■□ 20.3
CLIP1-202ENST00000358808 NCKAP5LQ9HCH0 1330 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 LMOD1P29536 600 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-202ENST00000358808 HAND2P61296 217 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 SELENOSQ9BQE4 189 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 THUMPD2Q9BTF0 503 aaKnown RBP11.56□□□□□ -0.56
CLIP1-202ENST00000358808 MAK16Q9BXY0 300 aaKnown RBP11.56□□□□□ -0.56
CLIP1-202ENST00000358808 RIOK3O14730 519 aaKnown RBP11.56□□□□□ -0.56
CLIP1-202ENST00000358808 STAT6P42226 847 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 SEPT6Q14141 434 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 STX1AQ16623 288 aa11.56□□□□□ -0.56
CLIP1-202ENST00000358808 ZFP91Q96JP5 570 aaPredicted RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms