RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 SNRPA1P09661 255 aaKnown RBP8.44□□□□□ -1.06
VPS13A-202ENST00000357409 MYBP10242 640 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 BEGAINQ9BUH8 593 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 PPP1R12BO60237 982 aaPredicted RBP8.43□□□□□ -1.06
VPS13A-202ENST00000357409 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.43□□□□□ -1.06
VPS13A-202ENST00000357409 UBN2Q6ZU65 1347 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 TRIM37O94972 964 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 RARSP54136 660 aaKnown RBP8.43□□□□□ -1.06
VPS13A-202ENST00000357409 UTP14AQ9BVJ6 771 aaKnown RBP8.43□□□□□ -1.06
VPS13A-202ENST00000357409 SUDS3Q9H7L9 328 aaPredicted RBP8.43□□□□□ -1.06
VPS13A-202ENST00000357409 LGR6Q9HBX8 967 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 ABCF3Q9NUQ8 709 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 KRT5P13647 590 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 BIRC2Q13490 618 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 UAP1Q16222 522 aaPredicted RBP8.43□□□□□ -1.06
VPS13A-202ENST00000357409 CCDC25Q86WR0 208 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 CAPZA3Q96KX2 299 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 SH3BP5O60239 455 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 TRIM47Q96LD4 638 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 RAPGEF1Q13905 1077 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 CFTRP13569 1480 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 GSTA5Q7RTV2 222 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 PPP1R9BQ96SB3 815 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 CRNKL1Q9BZJ0 848 aaKnown RBP8.43□□□□□ -1.06
VPS13A-202ENST00000357409 LMTK3Q96Q04 1460 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 TRIM21P19474 475 aaKnown RBP8.43□□□□□ -1.06
VPS13A-202ENST00000357409 LARGE2Q8N3Y3 721 aa8.43□□□□□ -1.06
VPS13A-202ENST00000357409 TLDC2A0PJX2 215 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 GTF2IP78347 998 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 G2E3Q7L622 706 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 IPO4Q8TEX9 1081 aaKnown RBP8.42□□□□□ -1.06
VPS13A-202ENST00000357409 SMTNL1A8MU46 457 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 LETM1O95202 739 aaPredicted RBP8.42□□□□□ -1.06
VPS13A-202ENST00000357409 CTDSPL2Q05D32 466 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 USP21Q9UK80 565 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 UBXN2AP68543 259 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 APOL6Q9BWW8 343 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 PSMC4P43686 418 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 GADL1Q6ZQY3 521 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 CCDC148Q8NFR7 591 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 CLIP2Q9UDT6 1046 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 USTQ9Y2C2 406 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 TRIM27P14373 513 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 LRMPQ12912 555 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 TPTE2Q6XPS3 522 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 CCNL1Q9UK58 526 aaPredicted RBP8.42□□□□□ -1.06
VPS13A-202ENST00000357409 KRT19P08727 400 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 KRT13P13646 458 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 TXKP42681 527 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 EEPD1Q7L9B9 569 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 HOOK3Q86VS8 718 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 JAKMIP2Q96AA8 810 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 ATAD2Q6PL18 1390 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 B4E1Z4 1266 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 UFL1O94874 794 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 SNAP25P60880 206 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 TMCO3Q6UWJ1 677 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 METTL14Q9HCE5 456 aaKnown RBP8.42□□□□□ -1.06
VPS13A-202ENST00000357409 SLC52A1Q9NWF4 448 aa8.42□□□□□ -1.06
VPS13A-202ENST00000357409 PSMB7Q99436 277 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 SCAF8Q9UPN6 1271 aaKnown RBP8.41□□□□□ -1.06
VPS13A-202ENST00000357409 RBM8AQ9Y5S9 174 aaKnown RBP8.41□□□□□ -1.06
VPS13A-202ENST00000357409 LDHCP07864 332 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 SESTD1Q86VW0 696 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 WDR63Q8IWG1 891 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 GPHNQ9NQX3 736 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-202ENST00000357409 STAT6P42226 847 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 PTPN14Q15678 1187 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 GRIPAP1Q4V328 841 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 MAATS1Q7Z4T9 603 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 CNPY2Q9Y2B0 182 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 EEF2KMTQ96G04 330 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 GPR101Q96P66 508 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-202ENST00000357409 FRMPD2Q68DX3 1309 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-202ENST00000357409 NDC80O14777 642 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.41□□□□□ -1.06
VPS13A-202ENST00000357409 FGD5Q6ZNL6 1462 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 KIAA0754O94854 1291 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 MCM4P33991 863 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 UTP14CQ5TAP6 766 aaKnown RBP8.41□□□□□ -1.06
VPS13A-202ENST00000357409 NCOA7Q8NI08 942 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 WASF1Q92558 559 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 LUC7LQ9NQ29 371 aaKnown RBP8.41□□□□□ -1.06
VPS13A-202ENST00000357409 FANCIQ9NVI1 1328 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 CFBP00751 764 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 TTF1Q15361 905 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-202ENST00000357409 UBXN4Q92575 508 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 RSPH6AQ9H0K4 717 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 DNAJC25Q9H1X3 360 aa8.41□□□□□ -1.06
VPS13A-202ENST00000357409 PABPN1LA6NDY0 278 aaKnown RBP8.4□□□□□ -1.06
VPS13A-202ENST00000357409 ZBTB43O43298 467 aa8.4□□□□□ -1.06
VPS13A-202ENST00000357409 RHPN1Q8TCX5 695 aa8.4□□□□□ -1.06
VPS13A-202ENST00000357409 BACH2Q9BYV9 841 aa8.4□□□□□ -1.06
VPS13A-202ENST00000357409 GTPBP4Q9BZE4 634 aaKnown RBP8.4□□□□□ -1.06
VPS13A-202ENST00000357409 LONRF3Q496Y0 759 aa8.4□□□□□ -1.06
VPS13A-202ENST00000357409 KIAA0825Q8IV33 1275 aa8.4□□□□□ -1.06
VPS13A-202ENST00000357409 CRACR2AQ9BSW2 395 aa8.4□□□□□ -1.06
VPS13A-202ENST00000357409 BICC1Q9H694 974 aaKnown RBP8.4□□□□□ -1.06
VPS13A-202ENST00000357409 RPGRIP1LQ68CZ1 1315 aa8.4□□□□□ -1.06
VPS13A-202ENST00000357409 CBFA2T2O43439 604 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms