RNA–Protein interactions for RNA: ENST00000349124.2

PTP4A3-202, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 1 (best) BASIC

Gene PTP4A3, Length 2,710 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-202ENST00000349124 CASP7P55210 303 aa21.39■■□□□ 1.01
PTP4A3-202ENST00000349124 IFFO2Q5TF58 517 aa21.39■■□□□ 1.01
PTP4A3-202ENST00000349124 DNAJC25Q9H1X3 360 aa21.39■■□□□ 1.01
PTP4A3-202ENST00000349124 SLIT3O75094 1523 aa21.39■■□□□ 1.01
PTP4A3-202ENST00000349124 APOBRQ0VD83 1088 aa21.38■■□□□ 1.01
PTP4A3-202ENST00000349124 ZNF594Q96JF6 807 aaPredicted RBP21.38■■□□□ 1.01
PTP4A3-202ENST00000349124 NCOA5Q9HCD5 579 aaKnown RBP21.38■■□□□ 1.01
PTP4A3-202ENST00000349124 MEGF6O75095 1541 aa21.38■■□□□ 1.01
PTP4A3-202ENST00000349124 NAP1L2Q9ULW6 460 aaPredicted RBP21.38■■□□□ 1.01
PTP4A3-202ENST00000349124 KRT32Q14532 448 aa21.37■■□□□ 1.01
PTP4A3-202ENST00000349124 TTLL7Q6ZT98 887 aa21.37■■□□□ 1.01
PTP4A3-202ENST00000349124 CCDC186Q7Z3E2 898 aa21.37■■□□□ 1.01
PTP4A3-202ENST00000349124 ZNF710Q8N1W2 664 aa21.37■■□□□ 1.01
PTP4A3-202ENST00000349124 CLSTN2Q9H4D0 955 aa21.37■■□□□ 1.01
PTP4A3-202ENST00000349124 NBPF26B4DH59 902 aa21.37■■□□□ 1.01
PTP4A3-202ENST00000349124 GUCY1B3Q02153 619 aa21.37■■□□□ 1.01
PTP4A3-202ENST00000349124 NBPF14Q5TI25 921 aa21.37■■□□□ 1.01
PTP4A3-202ENST00000349124 NBPF10Q6P3W6 841 aaKnown RBP21.37■■□□□ 1.01
PTP4A3-202ENST00000349124 NBPF15Q8N660 670 aa21.37■■□□□ 1.01
PTP4A3-202ENST00000349124 FMNL2Q96PY5 1086 aa21.37■■□□□ 1.01
PTP4A3-202ENST00000349124 U3KPZ7 1027 aaPredicted RBP21.37■■□□□ 1.01
PTP4A3-202ENST00000349124 CTDNEP1O95476 244 aa21.36■■□□□ 1.01
PTP4A3-202ENST00000349124 CABP4P57796 275 aa21.36■■□□□ 1.01
PTP4A3-202ENST00000349124 FOXO4P98177 505 aa21.36■■□□□ 1.01
PTP4A3-202ENST00000349124 LRRC24Q50LG9 513 aa21.36■■□□□ 1.01
PTP4A3-202ENST00000349124 ATG9AQ7Z3C6 839 aa21.36■■□□□ 1.01
PTP4A3-202ENST00000349124 KBTBD3Q8NAB2 608 aa21.35■■□□□ 1.01
PTP4A3-202ENST00000349124 DRC7Q8IY82 874 aa21.35■■□□□ 1.01
PTP4A3-202ENST00000349124 TRIM5Q9C035 493 aa21.35■■□□□ 1.01
PTP4A3-202ENST00000349124 RGPD5Q99666 1765 aa21.35■■□□□ 1.01
PTP4A3-202ENST00000349124 PHRF1Q9P1Y6 1649 aaKnown RBP21.35■■□□□ 1.01
PTP4A3-202ENST00000349124 ADD1P35611 737 aaKnown RBP21.35■■□□□ 1.01
PTP4A3-202ENST00000349124 TTLL5Q6EMB2 1281 aa21.35■■□□□ 1.01
PTP4A3-202ENST00000349124 ERCC4Q92889 916 aaPredicted RBP21.35■■□□□ 1.01
PTP4A3-202ENST00000349124 DCAF5Q96JK2 942 aa21.35■■□□□ 1.01
PTP4A3-202ENST00000349124 ZNF165P49910 485 aa21.34■■□□□ 1.01
PTP4A3-202ENST00000349124 PRIMPOLQ96LW4 560 aa21.34■■□□□ 1.01
PTP4A3-202ENST00000349124 GPHNQ9NQX3 736 aaPredicted RBP21.34■■□□□ 1.01
PTP4A3-202ENST00000349124 DDX19AQ9NUU7 478 aaKnown RBP21.34■■□□□ 1.01
PTP4A3-202ENST00000349124 A1BGP04217 495 aa21.34■■□□□ 1.01
PTP4A3-202ENST00000349124 NSUN7Q8NE18 718 aaKnown RBP21.34■■□□□ 1.01
PTP4A3-202ENST00000349124 C5P01031 1676 aa21.33■■□□□ 1.01
PTP4A3-202ENST00000349124 PLBD2Q8NHP8 589 aa21.33■■□□□ 1.01
PTP4A3-202ENST00000349124 PUS3Q9BZE2 481 aaKnown RBP21.33■■□□□ 1.01
PTP4A3-202ENST00000349124 RBM43Q6ZSC3 357 aaKnown RBP21.33■■□□□ 1
PTP4A3-202ENST00000349124 ZBTB3Q9H5J0 574 aa21.33■■□□□ 1
PTP4A3-202ENST00000349124 PAG1Q9NWQ8 432 aa21.33■■□□□ 1
PTP4A3-202ENST00000349124 PDIA4P13667 645 aaKnown RBP21.32■■□□□ 1
PTP4A3-202ENST00000349124 DHX32Q7L7V1 743 aaKnown RBP21.32■■□□□ 1
PTP4A3-202ENST00000349124 MAP7D2Q96T17 732 aa21.32■■□□□ 1
PTP4A3-202ENST00000349124 SIPA1L3O60292 1781 aaPredicted RBP21.32■■□□□ 1
PTP4A3-202ENST00000349124 MRC1P22897 1456 aa21.32■■□□□ 1
PTP4A3-202ENST00000349124 C1orf167Q5SNV9 1468 aa21.32■■□□□ 1
PTP4A3-202ENST00000349124 HMGN5P82970 282 aaKnown RBP21.32■■□□□ 1
PTP4A3-202ENST00000349124 GOLPH3LQ9H4A5 285 aa21.32■■□□□ 1
PTP4A3-202ENST00000349124 PTPDC1A2A3K4 754 aa21.31■■□□□ 1
PTP4A3-202ENST00000349124 SMARCC2Q8TAQ2 1214 aa21.31■■□□□ 1
PTP4A3-202ENST00000349124 C19orf44Q9H6X5 657 aa21.31■■□□□ 1
PTP4A3-202ENST00000349124 H7C1W4 665 aa21.31■■□□□ 1
PTP4A3-202ENST00000349124 PFKFB2O60825 505 aa21.31■■□□□ 1
PTP4A3-202ENST00000349124 ZNF75DP51815 510 aa21.31■■□□□ 1
PTP4A3-202ENST00000349124 FBXW7Q969H0 707 aa21.31■■□□□ 1
PTP4A3-202ENST00000349124 CCDC85AQ96PX6 553 aaPredicted RBP21.31■■□□□ 1
PTP4A3-202ENST00000349124 USP28Q96RU2 1077 aa21.31■■□□□ 1
PTP4A3-202ENST00000349124 GOLGA6L6A8MZA4 724 aa21.3■■□□□ 1
PTP4A3-202ENST00000349124 RIOK3O14730 519 aaKnown RBP21.3■■□□□ 1
PTP4A3-202ENST00000349124 HSPD1P10809 573 aaKnown RBP21.3■■□□□ 1
PTP4A3-202ENST00000349124 C11orf57Q6ZUT1 292 aaPredicted RBP21.3■■□□□ 1
PTP4A3-202ENST00000349124 OTUD7BQ6GQQ9 843 aa21.3■■□□□ 1
PTP4A3-202ENST00000349124 E7EWF7 191 aa21.29■■□□□ 1
PTP4A3-202ENST00000349124 EXOSC10Q01780 885 aaKnown RBP21.29■■□□□ 1
PTP4A3-202ENST00000349124 CCDC144BQ3MJ40 725 aa21.29■■□□□ 1
PTP4A3-202ENST00000349124 CCAR1Q8IX12 1150 aaKnown RBP21.29■■□□□ 1
PTP4A3-202ENST00000349124 CCDC144CPQ8IYA2 1237 aa21.29■■□□□ 1
PTP4A3-202ENST00000349124 KIF3AQ9Y496 699 aa21.29■■□□□ 1
PTP4A3-202ENST00000349124 ARID5BQ14865 1188 aa21.29■■□□□ 1
PTP4A3-202ENST00000349124 PLA2G4DQ86XP0 818 aa21.29■■□□□ 1
PTP4A3-202ENST00000349124 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.29■■□□□ 1
PTP4A3-202ENST00000349124 RAB11FIP4Q86YS3 637 aa21.28■■□□□ 1
PTP4A3-202ENST00000349124 BCL11BQ9C0K0 894 aaPredicted RBP21.28■■□□□ 1
PTP4A3-202ENST00000349124 BCL2L12Q9HB09 334 aa21.28■■□□□ 1
PTP4A3-202ENST00000349124 HSP90AB3PQ58FF7 597 aa21.28■■□□□ 1
PTP4A3-202ENST00000349124 TDRD7Q8NHU6 1098 aaKnown RBP21.28■■□□□ 1
PTP4A3-202ENST00000349124 ZSCAN16Q9H4T2 348 aaPredicted RBP21.28■■□□□ 1
PTP4A3-202ENST00000349124 CFAP45Q9UL16 551 aa21.28■■□□□ 1
PTP4A3-202ENST00000349124 GTF2F1P35269 517 aaKnown RBP eCLIP21.28■■□□□ 11e-6■■■□□ 15.2
PTP4A3-202ENST00000349124 HAND2P61296 217 aa21.28■■□□□ 1
PTP4A3-202ENST00000349124 FKBP4Q02790 459 aaKnown RBP eCLIP21.28■■□□□ 1
PTP4A3-202ENST00000349124 ZMYM1Q5SVZ6 1142 aa21.28■■□□□ 1
PTP4A3-202ENST00000349124 M0R2C6 588 aa21.27■■□□□ 1
PTP4A3-202ENST00000349124 ZSCAN25Q6NSZ9 544 aa21.27■■□□□ 1
PTP4A3-202ENST00000349124 ILDR1Q86SU0 546 aaPredicted RBP21.27■■□□□ 1
PTP4A3-202ENST00000349124 CACTINQ8WUQ7 758 aaKnown RBP21.27■■□□□ 1
PTP4A3-202ENST00000349124 OSBP2Q969R2 916 aa21.27■■□□□ 1
PTP4A3-202ENST00000349124 MAST3O60307 1309 aa21.27■■□□□ 1
PTP4A3-202ENST00000349124 SH3TC1Q8TE82 1336 aa21.27■■□□□ 1
PTP4A3-202ENST00000349124 A0A1B0GUL7 405 aa21.27■□□□□ 0.99
PTP4A3-202ENST00000349124 IFIT1P09914 478 aaKnown RBP21.27■□□□□ 0.99
PTP4A3-202ENST00000349124 PDIA3P30101 505 aaKnown RBP21.27■□□□□ 0.99
PTP4A3-202ENST00000349124 KLHL34Q8N239 644 aa21.27■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms