RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 USP28Q96RU2 1077 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 IFNKQ9P0W0 207 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 DNAI1Q9UI46 699 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 CFAP45Q9UL16 551 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 USP31Q70CQ4 1352 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 JCADQ9P266 1359 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 KINO60870 393 aaKnown RBP7.93□□□□□ -1.14
VPS39-202ENST00000348544 FOSBP53539 338 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 TPM4P67936 248 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 FAM160A1Q05DH4 1040 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 TAF7Q15545 349 aaPredicted RBP7.93□□□□□ -1.14
VPS39-202ENST00000348544 DPCR1Q3MIW9 517 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 HSP90AB4PQ58FF6 505 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 TEX35Q5T0J7 233 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 HDGFL1Q5TGJ6 251 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 REXO1L1PQ8IX06 675 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 CCDC150Q8NCX0 1101 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 EYA1Q99502 592 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 ZSCAN16Q9H4T2 348 aaPredicted RBP7.93□□□□□ -1.14
VPS39-202ENST00000348544 ATG3Q9NT62 314 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 RSPH14Q9UHP6 348 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 NEDD4P46934 1319 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 PHLPP2Q6ZVD8 1323 aa7.93□□□□□ -1.14
VPS39-202ENST00000348544 COL15A1P39059 1388 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 A2ML1A8K2U0 1454 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 H3BQV1 296 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 SFPQP23246 707 aaKnown RBP eCLIP7.92□□□□□ -1.14
VPS39-202ENST00000348544 GYS2P54840 703 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 IFFO2Q5TF58 517 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 CCDC73Q6ZRK6 1079 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 ZBTB9Q96C00 473 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 CARD6Q9BX69 1037 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 PARP3Q9Y6F1 533 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 IGSF1Q8N6C5 1336 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 ABCC6O95255 1503 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 MYO1CO00159 1063 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 SMC2O95347 1197 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 MTX1Q13505 466 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 ZSCAN26Q16670 478 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 TSGA10IPQ3SY00 556 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 CC2D1AQ6P1N0 951 aaPredicted RBP7.92□□□□□ -1.14
VPS39-202ENST00000348544 ILDR1Q86SU0 546 aaPredicted RBP7.92□□□□□ -1.14
VPS39-202ENST00000348544 AACSQ86V21 672 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 FSIP1Q8NA03 581 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 CCDC34Q96HJ3 373 aa7.92□□□□□ -1.14
VPS39-202ENST00000348544 ZFP91Q96JP5 570 aaPredicted RBP7.92□□□□□ -1.14
VPS39-202ENST00000348544 ARGLU1Q9NWB6 273 aaPredicted RBP7.92□□□□□ -1.14
VPS39-202ENST00000348544 TLR7Q9NYK1 1049 aaKnown RBP7.92□□□□□ -1.14
VPS39-202ENST00000348544 PI4KAP2A4QPH2 592 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 GNAT3A8MTJ3 354 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 NOP2P46087 812 aaKnown RBP7.91□□□□□ -1.14
VPS39-202ENST00000348544 SCRN1Q12765 414 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 NCAPHQ15003 741 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 HOMER1Q86YM7 354 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 FMR1NBQ8N0W7 255 aaPredicted RBP7.91□□□□□ -1.14
VPS39-202ENST00000348544 PI4KAP1Q8N8J0 262 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 CCDC191Q8NCU4 936 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 SMARCC2Q8TAQ2 1214 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 DNAAF4Q8WXU2 420 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 EAF2Q96CJ1 260 aaPredicted RBP7.91□□□□□ -1.14
VPS39-202ENST00000348544 RASSF4Q9H2L5 321 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 ACEP12821 1306 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 EFCAB8A8MWE9 144 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 TAF5LO75529 589 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 CTDNEP1O95476 244 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 ANXA1P04083 346 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 EVCP57679 992 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 SMC1AQ14683 1233 aaKnown RBP7.91□□□□□ -1.14
VPS39-202ENST00000348544 CCDC158Q5M9N0 1113 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 C10orf67Q8IYJ2 551 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 GPATCH3Q96I76 525 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 LRRC2Q9BYS8 371 aa7.91□□□□□ -1.14
VPS39-202ENST00000348544 H3BQF6 201 aa7.9□□□□□ -1.14
VPS39-202ENST00000348544 ATP8B1O43520 1251 aa7.9□□□□□ -1.14
VPS39-202ENST00000348544 URI1O94763 535 aaPredicted RBP7.9□□□□□ -1.14
VPS39-202ENST00000348544 SASH1O94885 1247 aa7.9□□□□□ -1.14
VPS39-202ENST00000348544 EIF2S2P20042 333 aaKnown RBP7.9□□□□□ -1.14
VPS39-202ENST00000348544 LRRFIP1Q32MZ4 808 aaKnown RBP7.9□□□□□ -1.14
VPS39-202ENST00000348544 Q6ZUG5 572 aa7.9□□□□□ -1.14
VPS39-202ENST00000348544 NSUN7Q8NE18 718 aaKnown RBP7.9□□□□□ -1.14
VPS39-202ENST00000348544 MNS1Q8NEH6 495 aa7.9□□□□□ -1.14
VPS39-202ENST00000348544 NAT10Q9H0A0 1025 aaKnown RBP7.9□□□□□ -1.14
VPS39-202ENST00000348544 CCDC8Q9H0W5 538 aaPredicted RBP7.9□□□□□ -1.14
VPS39-202ENST00000348544 HSD3B7Q9H2F3 369 aa7.9□□□□□ -1.14
VPS39-202ENST00000348544 CHPF2Q9P2E5 772 aa7.9□□□□□ -1.14
VPS39-202ENST00000348544 USP6P35125 1406 aa7.9□□□□□ -1.14
VPS39-202ENST00000348544 FLT4P35916 1363 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 A0A1B0GVL5 298 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 NUTM2FA1L443 756 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 HIP1O00291 1037 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 PPFIA3O75145 1194 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 TUBB4AP04350 444 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 ME1P48163 572 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 GOLGA8FQ08AF8 430 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 GOLGA8DPQ0D2H9 430 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 NUTM2GQ5VZR2 741 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 USPL1Q5W0Q7 1092 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 NAA16Q6N069 864 aaPredicted RBP7.9□□□□□ -1.15
VPS39-202ENST00000348544 EDC3Q96F86 508 aaKnown RBP7.9□□□□□ -1.15
VPS39-202ENST00000348544 FMNL2Q96PY5 1086 aa7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms