RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 FAM89AQ96GI7 184 aa18.37■□□□□ 0.53
UPF3B-202ENST00000345865 CCDC85AQ96PX6 553 aaPredicted RBP18.37■□□□□ 0.53
UPF3B-202ENST00000345865 LRRC2Q9BYS8 371 aa18.37■□□□□ 0.53
UPF3B-202ENST00000345865 NHSL1Q5SYE7 1610 aa18.37■□□□□ 0.53
UPF3B-202ENST00000345865 Q6ZUG5 572 aa18.37■□□□□ 0.53
UPF3B-202ENST00000345865 SYNE4Q8N205 404 aa18.37■□□□□ 0.53
UPF3B-202ENST00000345865 KDM4FA0A1W2PPD8 638 aa18.36■□□□□ 0.53
UPF3B-202ENST00000345865 JAK2O60674 1132 aa18.36■□□□□ 0.53
UPF3B-202ENST00000345865 ZMYM1Q5SVZ6 1142 aa18.36■□□□□ 0.53
UPF3B-202ENST00000345865 BTG4Q9NY30 223 aa18.36■□□□□ 0.53
UPF3B-202ENST00000345865 ITGB4P16144 1822 aa18.36■□□□□ 0.53
UPF3B-202ENST00000345865 PHF14O94880 888 aa18.35■□□□□ 0.53
UPF3B-202ENST00000345865 IFIT1P09914 478 aaKnown RBP18.35■□□□□ 0.53
UPF3B-202ENST00000345865 TRIM28Q13263 835 aaKnown RBP18.35■□□□□ 0.53
UPF3B-202ENST00000345865 HELLSQ9NRZ9 838 aa18.35■□□□□ 0.53
UPF3B-202ENST00000345865 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.35■□□□□ 0.53
UPF3B-202ENST00000345865 ADORA1P30542 326 aa18.35■□□□□ 0.53
UPF3B-202ENST00000345865 TTC6Q86TZ1 520 aa18.35■□□□□ 0.53
UPF3B-202ENST00000345865 GTF3C6Q969F1 213 aa18.35■□□□□ 0.53
UPF3B-202ENST00000345865 HLFQ16534 295 aa18.34■□□□□ 0.53
UPF3B-202ENST00000345865 CCDC57Q2TAC2 916 aa18.34■□□□□ 0.53
UPF3B-202ENST00000345865 SLC4A9Q96Q91 983 aa18.34■□□□□ 0.53
UPF3B-202ENST00000345865 HSPD1P10809 573 aaKnown RBP18.34■□□□□ 0.53
UPF3B-202ENST00000345865 VSIG10Q8N0Z9 540 aa18.34■□□□□ 0.53
UPF3B-202ENST00000345865 CEP126Q9P2H0 1117 aa18.34■□□□□ 0.53
UPF3B-202ENST00000345865 KAT6BQ8WYB5 2073 aa18.34■□□□□ 0.53
UPF3B-202ENST00000345865 MAST3O60307 1309 aa18.34■□□□□ 0.53
UPF3B-202ENST00000345865 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.34■□□□□ 0.53
UPF3B-202ENST00000345865 PCCAP05165 728 aaPredicted RBP18.33■□□□□ 0.53
UPF3B-202ENST00000345865 PDCP20941 246 aa18.33■□□□□ 0.53
UPF3B-202ENST00000345865 HS1BP3Q53T59 392 aa18.33■□□□□ 0.53
UPF3B-202ENST00000345865 BRF1Q92994 677 aa18.33■□□□□ 0.53
UPF3B-202ENST00000345865 DSCC1Q9BVC3 393 aa18.33■□□□□ 0.53
UPF3B-202ENST00000345865 CSF1RP07333 972 aa18.33■□□□□ 0.52
UPF3B-202ENST00000345865 M0R2C6 588 aa18.32■□□□□ 0.52
UPF3B-202ENST00000345865 RNF113AO15541 343 aaKnown RBP18.32■□□□□ 0.52
UPF3B-202ENST00000345865 SCARF1Q14162 830 aa18.32■□□□□ 0.52
UPF3B-202ENST00000345865 OSBP2Q969R2 916 aa18.32■□□□□ 0.52
UPF3B-202ENST00000345865 XAGE2Q96GT9 111 aa18.32■□□□□ 0.52
UPF3B-202ENST00000345865 FKBP4Q02790 459 aaKnown RBP eCLIP18.32■□□□□ 0.52
UPF3B-202ENST00000345865 SCRN1Q12765 414 aa18.32■□□□□ 0.52
UPF3B-202ENST00000345865 GIMAP6Q6P9H5 292 aa18.32■□□□□ 0.52
UPF3B-202ENST00000345865 KIF6Q6ZMV9 814 aa18.32■□□□□ 0.52
UPF3B-202ENST00000345865 ZBTB38Q8NAP3 1195 aaPredicted RBP18.32■□□□□ 0.52
UPF3B-202ENST00000345865 FUCA2Q9BTY2 467 aa18.32■□□□□ 0.52
UPF3B-202ENST00000345865 PLA2G12BQ9BX93 195 aa18.32■□□□□ 0.52
UPF3B-202ENST00000345865 MAP3K15Q6ZN16 1313 aa18.31■□□□□ 0.52
UPF3B-202ENST00000345865 GPTP24298 496 aa18.31■□□□□ 0.52
UPF3B-202ENST00000345865 CSPP1Q1MSJ5 1256 aa18.31■□□□□ 0.52
UPF3B-202ENST00000345865 GIGYF2Q6Y7W6 1299 aaKnown RBP18.31■□□□□ 0.52
UPF3B-202ENST00000345865 TEX13AQ9BXU3 409 aaPredicted RBP18.31■□□□□ 0.52
UPF3B-202ENST00000345865 NOL7Q9UMY1 257 aaKnown RBP18.31■□□□□ 0.52
UPF3B-202ENST00000345865 SPEF2Q9C093 1822 aa18.31■□□□□ 0.52
UPF3B-202ENST00000345865 HCLS1P14317 486 aaPredicted RBP18.31■□□□□ 0.52
UPF3B-202ENST00000345865 KRT85P78386 507 aa18.31■□□□□ 0.52
UPF3B-202ENST00000345865 TTLL5Q6EMB2 1281 aa18.31■□□□□ 0.52
UPF3B-202ENST00000345865 DHX32Q7L7V1 743 aaKnown RBP18.31■□□□□ 0.52
UPF3B-202ENST00000345865 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.31■□□□□ 0.52
UPF3B-202ENST00000345865 TFIP11Q9UBB9 837 aaKnown RBP18.31■□□□□ 0.52
UPF3B-202ENST00000345865 FOXP2O15409 715 aa18.3■□□□□ 0.52
UPF3B-202ENST00000345865 STARD3NLO95772 234 aa18.3■□□□□ 0.52
UPF3B-202ENST00000345865 PDIA4P13667 645 aaKnown RBP18.3■□□□□ 0.52
UPF3B-202ENST00000345865 HSP90B1P14625 803 aaKnown RBP18.3■□□□□ 0.52
UPF3B-202ENST00000345865 EXOSC10Q01780 885 aaKnown RBP18.3■□□□□ 0.52
UPF3B-202ENST00000345865 DISP2A7MBM2 1401 aa18.3■□□□□ 0.52
UPF3B-202ENST00000345865 E7EWF7 191 aa18.29■□□□□ 0.52
UPF3B-202ENST00000345865 DDX11Q96FC9 970 aa18.29■□□□□ 0.52
UPF3B-202ENST00000345865 LETM1O95202 739 aaPredicted RBP18.29■□□□□ 0.52
UPF3B-202ENST00000345865 CYP19A1P11511 503 aaPredicted RBP18.29■□□□□ 0.52
UPF3B-202ENST00000345865 PI16Q6UXB8 463 aa18.29■□□□□ 0.52
UPF3B-202ENST00000345865 NLRP10Q86W26 655 aa18.29■□□□□ 0.52
UPF3B-202ENST00000345865 TICAM2Q86XR7 235 aa18.29■□□□□ 0.52
UPF3B-202ENST00000345865 BCL9O00512 1426 aa18.29■□□□□ 0.52
UPF3B-202ENST00000345865 ELP1O95163 1332 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 LIG1P18858 919 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 APOBRQ0VD83 1088 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 IFIT5Q13325 482 aaKnown RBP18.28■□□□□ 0.52
UPF3B-202ENST00000345865 NAP1L5Q96NT1 182 aaPredicted RBP18.28■□□□□ 0.52
UPF3B-202ENST00000345865 AGXT2Q9BYV1 514 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 FBXO3Q9UK99 471 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 RIC1Q4ADV7 1423 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 PFKFB2O60825 505 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 CTDNEP1O95476 244 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 MSNP26038 577 aaKnown RBP18.28■□□□□ 0.52
UPF3B-202ENST00000345865 CCDC158Q5M9N0 1113 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 TTC39AQ5SRH9 613 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 CHST3Q7LGC8 479 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 TTLL11Q8NHH1 800 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 SMARCC2Q8TAQ2 1214 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 GREM2Q9H772 168 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 AKAP2Q9Y2D5 859 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 ZBTB1Q9Y2K1 713 aa18.28■□□□□ 0.52
UPF3B-202ENST00000345865 HMGB1P09429 215 aaKnown RBP18.27■□□□□ 0.52
UPF3B-202ENST00000345865 GORABQ5T7V8 394 aa18.27■□□□□ 0.52
UPF3B-202ENST00000345865 FAM184AQ8NB25 1140 aa18.27■□□□□ 0.52
UPF3B-202ENST00000345865 NWD2Q9ULI1 1742 aa18.27■□□□□ 0.52
UPF3B-202ENST00000345865 RIPOR2Q9Y4F9 1068 aa18.27■□□□□ 0.52
UPF3B-202ENST00000345865 ZAP70P43403 619 aa18.27■□□□□ 0.51
UPF3B-202ENST00000345865 FGD1P98174 961 aa18.27■□□□□ 0.51
UPF3B-202ENST00000345865 TAF7LQ5H9L4 462 aa18.27■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms