RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ATP2B4P23634 1241 aa11.93□□□□□ -0.5
USP54-201ENST00000339859 PCMTD1Q96MG8 357 aaPredicted RBP11.93□□□□□ -0.5
USP54-201ENST00000339859 PTPRUQ92729 1446 aa11.93□□□□□ -0.5
USP54-201ENST00000339859 ITSN1Q15811 1721 aa11.93□□□□□ -0.5
USP54-201ENST00000339859 HEG1Q9ULI3 1381 aa11.93□□□□□ -0.5
USP54-201ENST00000339859 NEURL4Q96JN8 1562 aa11.92□□□□□ -0.5
USP54-201ENST00000339859 CNKSR2Q8WXI2 1034 aa11.92□□□□□ -0.5
USP54-201ENST00000339859 MED14O60244 1454 aa11.92□□□□□ -0.5
USP54-201ENST00000339859 STK38Q15208 465 aa11.92□□□□□ -0.5
USP54-201ENST00000339859 CEP85Q6P2H3 762 aa11.92□□□□□ -0.5
USP54-201ENST00000339859 ZBTB38Q8NAP3 1195 aaPredicted RBP11.92□□□□□ -0.5
USP54-201ENST00000339859 PIGBQ92521 554 aa11.92□□□□□ -0.5
USP54-201ENST00000339859 TTC22Q5TAA0 569 aa11.92□□□□□ -0.5
USP54-201ENST00000339859 NCOA7Q8NI08 942 aa11.92□□□□□ -0.5
USP54-201ENST00000339859 SLC9C2Q5TAH2 1124 aa11.92□□□□□ -0.5
USP54-201ENST00000339859 GRM1Q13255 1194 aa11.92□□□□□ -0.5
USP54-201ENST00000339859 OLFM4Q6UX06 510 aa11.92□□□□□ -0.5
USP54-201ENST00000339859 BARGINQ6ZT62 677 aa11.92□□□□□ -0.5
USP54-201ENST00000339859 CEP131Q9UPN4 1083 aa11.92□□□□□ -0.5
USP54-201ENST00000339859 KCNQ3O43525 872 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 NEURL1BA8MQ27 555 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 H7C1D1 291 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 SERPINB2P05120 415 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 NUCB1Q02818 461 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 MAGEB6Q8N7X4 407 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 TBC1D22AQ8WUA7 517 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 PLEKHF1Q96S99 279 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 SPATA31A1Q5TZJ5 1347 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 PPEF1O14829 653 aaPredicted RBP11.91□□□□□ -0.5
USP54-201ENST00000339859 RNF113AO15541 343 aaKnown RBP11.91□□□□□ -0.5
USP54-201ENST00000339859 PCCAP05165 728 aaPredicted RBP11.91□□□□□ -0.5
USP54-201ENST00000339859 MSNP26038 577 aaKnown RBP11.91□□□□□ -0.5
USP54-201ENST00000339859 PIBF1Q8WXW3 757 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 PPLO60437 1756 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 SSRP1Q08945 709 aaKnown RBP11.91□□□□□ -0.5
USP54-201ENST00000339859 LPIN2Q92539 896 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 TECPR2O15040 1411 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 GOLGA8AA7E2F4 631 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 GOLGA8BA8MQT2 603 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 MCMDC2Q4G0Z9 681 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 SASS6Q6UVJ0 657 aa11.91□□□□□ -0.5
USP54-201ENST00000339859 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.9□□□□□ -0.5
USP54-201ENST00000339859 ERVV-1B6SEH8 477 aa11.9□□□□□ -0.5
USP54-201ENST00000339859 RPS8P62241 208 aaKnown RBP11.9□□□□□ -0.5
USP54-201ENST00000339859 USP16Q9Y5T5 823 aa11.9□□□□□ -0.5
USP54-201ENST00000339859 SOS2Q07890 1332 aaPredicted RBP11.9□□□□□ -0.5
USP54-201ENST00000339859 FBXO41Q8TF61 875 aa11.9□□□□□ -0.5
USP54-201ENST00000339859 SH2D4AQ9H788 454 aa11.9□□□□□ -0.5
USP54-201ENST00000339859 C3P01024 1663 aa11.9□□□□□ -0.5
USP54-201ENST00000339859 SSH2Q76I76 1423 aa11.9□□□□□ -0.5
USP54-201ENST00000339859 ADRA2BP18089 450 aa11.9□□□□□ -0.5
USP54-201ENST00000339859 EPS15P42566 896 aa11.9□□□□□ -0.5
USP54-201ENST00000339859 TMEM67Q5HYA8 995 aa11.9□□□□□ -0.5
USP54-201ENST00000339859 TTC6Q86TZ1 520 aa11.9□□□□□ -0.5
USP54-201ENST00000339859 ESR2Q92731 530 aa11.9□□□□□ -0.5
USP54-201ENST00000339859 CCDC24Q8N4L8 307 aa11.9□□□□□ -0.51
USP54-201ENST00000339859 RPS6KA4O75676 772 aa11.89□□□□□ -0.51
USP54-201ENST00000339859 SLC4A8Q2Y0W8 1093 aa11.89□□□□□ -0.51
USP54-201ENST00000339859 PICK1Q9NRD5 415 aa11.89□□□□□ -0.51
USP54-201ENST00000339859 FAM13BQ9NYF5 915 aa11.89□□□□□ -0.51
USP54-201ENST00000339859 GOLGA6L3A6NEY3 463 aa11.89□□□□□ -0.51
USP54-201ENST00000339859 K7ELQ4 463 aaPredicted RBP11.89□□□□□ -0.51
USP54-201ENST00000339859 SUCLG2Q96I99 432 aa11.89□□□□□ -0.51
USP54-201ENST00000339859 ATF5Q9Y2D1 282 aaPredicted RBP11.89□□□□□ -0.51
USP54-201ENST00000339859 ZBTB1Q9Y2K1 713 aa11.89□□□□□ -0.51
USP54-201ENST00000339859 TTLL7Q6ZT98 887 aa11.89□□□□□ -0.51
USP54-201ENST00000339859 IL27Q8NEV9 243 aa11.89□□□□□ -0.51
USP54-201ENST00000339859 SPATA31A5Q5VU36 1347 aa11.88□□□□□ -0.51
USP54-201ENST00000339859 SPATA31A7Q8IWB4 1347 aa11.88□□□□□ -0.51
USP54-201ENST00000339859 LARP1BQ659C4 914 aaKnown RBP11.88□□□□□ -0.51
USP54-201ENST00000339859 TMTC2Q8N394 836 aa11.88□□□□□ -0.51
USP54-201ENST00000339859 SH2B1Q9NRF2 756 aaPredicted RBP11.88□□□□□ -0.51
USP54-201ENST00000339859 DALRD3Q5D0E6 543 aaKnown RBP11.88□□□□□ -0.51
USP54-201ENST00000339859 AXIN2Q9Y2T1 843 aa11.88□□□□□ -0.51
USP54-201ENST00000339859 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.88□□□□□ -0.51
USP54-201ENST00000339859 PPP4R3AQ6IN85 833 aa11.88□□□□□ -0.51
USP54-201ENST00000339859 NAT10Q9H0A0 1025 aaKnown RBP11.88□□□□□ -0.51
USP54-201ENST00000339859 WDR33Q9C0J8 1336 aaKnown RBP11.88□□□□□ -0.51
USP54-201ENST00000339859 A0A1B0GUL7 405 aa11.88□□□□□ -0.51
USP54-201ENST00000339859 B4DLN1 442 aa11.88□□□□□ -0.51
USP54-201ENST00000339859 MRPL12P52815 198 aaKnown RBP11.88□□□□□ -0.51
USP54-201ENST00000339859 TNNI3KQ59H18 835 aa11.88□□□□□ -0.51
USP54-201ENST00000339859 BMP2KLQ5H9B9 411 aa11.88□□□□□ -0.51
USP54-201ENST00000339859 BMP2KQ9NSY1 1161 aaPredicted RBP11.88□□□□□ -0.51
USP54-201ENST00000339859 FPGT-TNNI3KV9GXZ4 949 aa11.88□□□□□ -0.51
USP54-201ENST00000339859 XAGE2Q96GT9 111 aa11.88□□□□□ -0.51
USP54-201ENST00000339859 EAPPQ56P03 285 aaPredicted RBP11.87□□□□□ -0.51
USP54-201ENST00000339859 TEX11Q8IYF3 940 aa11.87□□□□□ -0.51
USP54-201ENST00000339859 NOC3LQ8WTT2 800 aaKnown RBP11.87□□□□□ -0.51
USP54-201ENST00000339859 MCM9Q9NXL9 1143 aa11.87□□□□□ -0.51
USP54-201ENST00000339859 KIF13AQ9H1H9 1805 aa11.87□□□□□ -0.51
USP54-201ENST00000339859 PDE1AP54750 535 aa11.87□□□□□ -0.51
USP54-201ENST00000339859 TSHZ2Q9NRE2 1034 aa11.87□□□□□ -0.51
USP54-201ENST00000339859 MCM5P33992 734 aa11.87□□□□□ -0.51
USP54-201ENST00000339859 GIGYF2Q6Y7W6 1299 aaKnown RBP11.87□□□□□ -0.51
USP54-201ENST00000339859 TMOD4Q9NZQ9 345 aa11.87□□□□□ -0.51
USP54-201ENST00000339859 MST1RQ04912 1400 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 ARHGAP23Q9P227 1491 aa11.86□□□□□ -0.51
USP54-201ENST00000339859 IFIT1BQ5T764 474 aaKnown RBP11.86□□□□□ -0.51
USP54-201ENST00000339859 BEGAINQ9BUH8 593 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms