RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 PI4K2BQ8TCG2 481 aa12.99□□□□□ -0.33
RTN3-201ENST00000338850 DNAAF4Q8WXU2 420 aa12.99□□□□□ -0.33
RTN3-201ENST00000338850 KCNB2Q92953 911 aa12.99□□□□□ -0.33
RTN3-201ENST00000338850 ZNF622Q969S3 477 aaKnown RBP eCLIP12.99□□□□□ -0.33
RTN3-201ENST00000338850 TRIM44Q96DX7 344 aaPredicted RBP12.99□□□□□ -0.33
RTN3-201ENST00000338850 COL11A2P13942 1736 aaPredicted RBP12.99□□□□□ -0.33
RTN3-201ENST00000338850 RGL2O15211 777 aa12.98□□□□□ -0.33
RTN3-201ENST00000338850 SGSM2O43147 1006 aa12.98□□□□□ -0.33
RTN3-201ENST00000338850 NEK4P51957 841 aa12.98□□□□□ -0.33
RTN3-201ENST00000338850 TERF1P54274 439 aa12.98□□□□□ -0.33
RTN3-201ENST00000338850 ST5P78524 1137 aa12.98□□□□□ -0.33
RTN3-201ENST00000338850 ZSCAN23Q3MJ62 389 aa12.98□□□□□ -0.33
RTN3-201ENST00000338850 CNTROBQ8N137 903 aa12.98□□□□□ -0.33
RTN3-201ENST00000338850 RBM46Q8TBY0 533 aaKnown RBP12.98□□□□□ -0.33
RTN3-201ENST00000338850 RHPN1Q8TCX5 695 aa12.98□□□□□ -0.33
RTN3-201ENST00000338850 SYAP1Q96A49 352 aaPredicted RBP12.98□□□□□ -0.33
RTN3-201ENST00000338850 SNRKQ9NRH2 765 aa12.98□□□□□ -0.33
RTN3-201ENST00000338850 ZNF652Q9Y2D9 606 aa12.98□□□□□ -0.33
RTN3-201ENST00000338850 RFX7Q2KHR2 1363 aa12.97□□□□□ -0.33
RTN3-201ENST00000338850 WDR33Q9C0J8 1336 aaKnown RBP12.97□□□□□ -0.33
RTN3-201ENST00000338850 NPHP1O15259 732 aa12.97□□□□□ -0.33
RTN3-201ENST00000338850 GLRX3O76003 335 aaKnown RBP12.97□□□□□ -0.33
RTN3-201ENST00000338850 MCM5P33992 734 aa12.97□□□□□ -0.33
RTN3-201ENST00000338850 MCTP1Q6DN14 999 aa12.97□□□□□ -0.33
RTN3-201ENST00000338850 STYK1Q6J9G0 422 aa12.97□□□□□ -0.33
RTN3-201ENST00000338850 TM6SF1Q9BZW5 370 aa12.97□□□□□ -0.33
RTN3-201ENST00000338850 RRAGCQ9HB90 399 aa12.97□□□□□ -0.33
RTN3-201ENST00000338850 DBF4Q9UBU7 674 aaPredicted RBP12.97□□□□□ -0.33
RTN3-201ENST00000338850 C21orf2O43822 256 aa12.96□□□□□ -0.33
RTN3-201ENST00000338850 SRGNP10124 158 aa12.96□□□□□ -0.33
RTN3-201ENST00000338850 APLP1P51693 650 aa12.96□□□□□ -0.33
RTN3-201ENST00000338850 LRSAM1Q6UWE0 723 aa12.96□□□□□ -0.33
RTN3-201ENST00000338850 PPP1R42Q7Z4L9 355 aa12.96□□□□□ -0.33
RTN3-201ENST00000338850 NBPF5PQ86XG9 351 aaPredicted RBP12.96□□□□□ -0.33
RTN3-201ENST00000338850 TICAM2Q86XR7 235 aa12.96□□□□□ -0.33
RTN3-201ENST00000338850 ZGPATQ8N5A5 531 aaKnown RBP12.96□□□□□ -0.33
RTN3-201ENST00000338850 RUFY2Q8WXA3 655 aa12.96□□□□□ -0.33
RTN3-201ENST00000338850 CNKSR1Q969H4 720 aa12.96□□□□□ -0.33
RTN3-201ENST00000338850 ZNF219Q9P2Y4 722 aaPredicted RBP12.96□□□□□ -0.33
RTN3-201ENST00000338850 GLTPD2A6NH11 291 aa12.95□□□□□ -0.34
RTN3-201ENST00000338850 HIP1O00291 1037 aa12.95□□□□□ -0.34
RTN3-201ENST00000338850 HLFQ16534 295 aa12.95□□□□□ -0.34
RTN3-201ENST00000338850 PRPF40BQ6NWY9 871 aaKnown RBP12.95□□□□□ -0.34
RTN3-201ENST00000338850 ZSCAN30Q86W11 494 aa12.95□□□□□ -0.34
RTN3-201ENST00000338850 MASTLQ96GX5 879 aa12.95□□□□□ -0.34
RTN3-201ENST00000338850 TTC14Q96N46 770 aa12.95□□□□□ -0.34
RTN3-201ENST00000338850 ANO2Q9NQ90 1003 aa12.95□□□□□ -0.34
RTN3-201ENST00000338850 FOXD4L1Q9NU39 408 aa12.95□□□□□ -0.34
RTN3-201ENST00000338850 NIP7Q9Y221 180 aaKnown RBP eCLIP12.95□□□□□ -0.34
RTN3-201ENST00000338850 TNRC6CQ9HCJ0 1690 aaKnown RBP12.95□□□□□ -0.34
RTN3-201ENST00000338850 LTBP3Q9NS15 1303 aa12.94□□□□□ -0.34
RTN3-201ENST00000338850 TCHHQ07283 1943 aa12.94□□□□□ -0.34
RTN3-201ENST00000338850 KLRG2A4D1S0 409 aaPredicted RBP12.94□□□□□ -0.34
RTN3-201ENST00000338850 TRIM6-TRIM34B2RNG4 842 aa12.94□□□□□ -0.34
RTN3-201ENST00000338850 FSTL1Q12841 308 aa12.94□□□□□ -0.34
RTN3-201ENST00000338850 GPATCH3Q96I76 525 aa12.94□□□□□ -0.34
RTN3-201ENST00000338850 LSG1Q9H089 658 aaKnown RBP12.94□□□□□ -0.34
RTN3-201ENST00000338850 HYPKQ9NX55 129 aa12.94□□□□□ -0.34
RTN3-201ENST00000338850 RPAP1Q9BWH6 1393 aaPredicted RBP12.94□□□□□ -0.34
RTN3-201ENST00000338850 APBB1O00213 710 aa12.93□□□□□ -0.34
RTN3-201ENST00000338850 SURF6O75683 361 aaKnown RBP12.93□□□□□ -0.34
RTN3-201ENST00000338850 PKP1Q13835 747 aa12.93□□□□□ -0.34
RTN3-201ENST00000338850 CAVIN1Q6NZI2 390 aaKnown RBP12.93□□□□□ -0.34
RTN3-201ENST00000338850 KSR2Q6VAB6 950 aa12.93□□□□□ -0.34
RTN3-201ENST00000338850 TPTE2Q6XPS3 522 aa12.93□□□□□ -0.34
RTN3-201ENST00000338850 FAM184AQ8NB25 1140 aa12.93□□□□□ -0.34
RTN3-201ENST00000338850 GPT2Q8TD30 523 aa12.93□□□□□ -0.34
RTN3-201ENST00000338850 C7orf43Q8WVR3 580 aa12.93□□□□□ -0.34
RTN3-201ENST00000338850 PALD1Q9ULE6 856 aa12.93□□□□□ -0.34
RTN3-201ENST00000338850 TIAM2Q8IVF5 1701 aa12.93□□□□□ -0.34
RTN3-201ENST00000338850 SLX4Q8IY92 1834 aa12.92□□□□□ -0.34
RTN3-201ENST00000338850 SPEF2Q9C093 1822 aa12.92□□□□□ -0.34
RTN3-201ENST00000338850 ARFGEF2Q9Y6D5 1785 aa12.92□□□□□ -0.34
RTN3-201ENST00000338850 FAM177BA6PVY3 158 aa12.92□□□□□ -0.34
RTN3-201ENST00000338850 ERVV-1B6SEH8 477 aa12.92□□□□□ -0.34
RTN3-201ENST00000338850 SRGAP3O43295 1099 aa12.92□□□□□ -0.34
RTN3-201ENST00000338850 NPR1P16066 1061 aa12.92□□□□□ -0.34
RTN3-201ENST00000338850 FER1L6Q2WGJ9 1857 aa12.92□□□□□ -0.34
RTN3-201ENST00000338850 UVSSAQ2YD98 709 aa12.92□□□□□ -0.34
RTN3-201ENST00000338850 TTLL7Q6ZT98 887 aa12.92□□□□□ -0.34
RTN3-201ENST00000338850 RILPL2Q969X0 211 aa12.92□□□□□ -0.34
RTN3-201ENST00000338850 ZSCAN31Q96LW9 406 aaPredicted RBP12.92□□□□□ -0.34
RTN3-201ENST00000338850 ALDH8A1Q9H2A2 487 aaPredicted RBP12.92□□□□□ -0.34
RTN3-201ENST00000338850 TAOK3Q9H2K8 898 aa12.92□□□□□ -0.34
RTN3-201ENST00000338850 PHAXQ9H814 394 aaKnown RBP12.92□□□□□ -0.34
RTN3-201ENST00000338850 SH2B1Q9NRF2 756 aaPredicted RBP12.92□□□□□ -0.34
RTN3-201ENST00000338850 CHPF2Q9P2E5 772 aa12.92□□□□□ -0.34
RTN3-201ENST00000338850 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.92□□□□□ -0.34
RTN3-201ENST00000338850 ATP6V1DQ9Y5K8 247 aa12.92□□□□□ -0.34
RTN3-201ENST00000338850 MAP3K15Q6ZN16 1313 aa12.91□□□□□ -0.34
RTN3-201ENST00000338850 LETM1O95202 739 aaPredicted RBP12.91□□□□□ -0.34
RTN3-201ENST00000338850 DDX58O95786 925 aaKnown RBP12.91□□□□□ -0.34
RTN3-201ENST00000338850 TPM2P07951 284 aa12.91□□□□□ -0.34
RTN3-201ENST00000338850 VEGFAP15692 232 aaPredicted RBP12.91□□□□□ -0.34
RTN3-201ENST00000338850 CSPP1Q1MSJ5 1256 aa12.91□□□□□ -0.34
RTN3-201ENST00000338850 ERFEQ4G0M1 354 aa12.91□□□□□ -0.34
RTN3-201ENST00000338850 SOGA3Q5TF21 947 aa12.91□□□□□ -0.34
RTN3-201ENST00000338850 CLASRPQ8N2M8 674 aaKnown RBP12.91□□□□□ -0.34
RTN3-201ENST00000338850 DNAJC5GQ8N7S2 189 aa12.91□□□□□ -0.34
RTN3-201ENST00000338850 LINS1Q8NG48 757 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms