RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 DICER1Q9UPY3 1922 aaKnown RBP19.9■□□□□ 0.78
CCDC28A-201ENST00000332797 GNAI2P04899 355 aa19.89■□□□□ 0.77
CCDC28A-201ENST00000332797 MINPP1Q9UNW1 487 aa19.89■□□□□ 0.77
CCDC28A-201ENST00000332797 C6orf229H3BNL8 230 aa19.88■□□□□ 0.77
CCDC28A-201ENST00000332797 UFL1O94874 794 aa19.88■□□□□ 0.77
CCDC28A-201ENST00000332797 C20orf194Q5TEA3 1177 aa19.88■□□□□ 0.77
CCDC28A-201ENST00000332797 PODXL2Q9NZ53 605 aa19.88■□□□□ 0.77
CCDC28A-201ENST00000332797 COG6Q9Y2V7 657 aa19.88■□□□□ 0.77
CCDC28A-201ENST00000332797 XDHP47989 1333 aa19.88■□□□□ 0.77
CCDC28A-201ENST00000332797 PPIP5K2O43314 1243 aa19.87■□□□□ 0.77
CCDC28A-201ENST00000332797 MVPQ14764 893 aaKnown RBP19.87■□□□□ 0.77
CCDC28A-201ENST00000332797 AOC3Q16853 763 aa19.87■□□□□ 0.77
CCDC28A-201ENST00000332797 LDHAL6AQ6ZMR3 332 aa19.87■□□□□ 0.77
CCDC28A-201ENST00000332797 LARGE2Q8N3Y3 721 aa19.87■□□□□ 0.77
CCDC28A-201ENST00000332797 TBC1D16Q8TBP0 767 aa19.87■□□□□ 0.77
CCDC28A-201ENST00000332797 CNNM1Q9NRU3 951 aa19.87■□□□□ 0.77
CCDC28A-201ENST00000332797 POLLQ9UGP5 575 aa19.87■□□□□ 0.77
CCDC28A-201ENST00000332797 GGA1Q9UJY5 639 aa19.87■□□□□ 0.77
CCDC28A-201ENST00000332797 ZBTB7BO15156 539 aaPredicted RBP19.86■□□□□ 0.77
CCDC28A-201ENST00000332797 KLHDC4Q8TBB5 520 aa19.86■□□□□ 0.77
CCDC28A-201ENST00000332797 GPR101Q96P66 508 aaPredicted RBP19.86■□□□□ 0.77
CCDC28A-201ENST00000332797 COL4A5P29400 1685 aa19.86■□□□□ 0.77
CCDC28A-201ENST00000332797 RRP1P56182 461 aaKnown RBP19.86■□□□□ 0.77
CCDC28A-201ENST00000332797 CHRNDQ07001 517 aa19.86■□□□□ 0.77
CCDC28A-201ENST00000332797 PDE3AQ14432 1141 aa19.86■□□□□ 0.77
CCDC28A-201ENST00000332797 JDP2Q8WYK2 163 aa19.86■□□□□ 0.77
CCDC28A-201ENST00000332797 ANKRD2Q9GZV1 360 aa19.86■□□□□ 0.77
CCDC28A-201ENST00000332797 C1orf115Q9H7X2 142 aa19.86■□□□□ 0.77
CCDC28A-201ENST00000332797 ZC3H4Q9UPT8 1303 aaKnown RBP19.85■□□□□ 0.77
CCDC28A-201ENST00000332797 WASHC4Q2M389 1173 aa19.85■□□□□ 0.77
CCDC28A-201ENST00000332797 ZNF526Q8TF50 670 aaPredicted RBP19.85■□□□□ 0.77
CCDC28A-201ENST00000332797 EYA3Q99504 573 aa19.85■□□□□ 0.77
CCDC28A-201ENST00000332797 PUS3Q9BZE2 481 aaKnown RBP19.85■□□□□ 0.77
CCDC28A-201ENST00000332797 A0A1B0GUL6 1792 aa19.84■□□□□ 0.77
CCDC28A-201ENST00000332797 RIMBP2O15034 1052 aa19.84■□□□□ 0.77
CCDC28A-201ENST00000332797 ATP2B4P23634 1241 aa19.84■□□□□ 0.77
CCDC28A-201ENST00000332797 RFX5P48382 616 aaPredicted RBP19.84■□□□□ 0.77
CCDC28A-201ENST00000332797 KIAA2012Q0VF49 1180 aa19.84■□□□□ 0.77
CCDC28A-201ENST00000332797 NIM1KQ8IY84 436 aa19.84■□□□□ 0.77
CCDC28A-201ENST00000332797 VPS33BQ9H267 617 aa19.84■□□□□ 0.77
CCDC28A-201ENST00000332797 DDX19BQ9UMR2 479 aa19.84■□□□□ 0.77
CCDC28A-201ENST00000332797 SRGAP3O43295 1099 aa19.83■□□□□ 0.76
CCDC28A-201ENST00000332797 HELBQ8NG08 1087 aaPredicted RBP19.83■□□□□ 0.76
CCDC28A-201ENST00000332797 WTIPA6NIX2 430 aaPredicted RBP19.82■□□□□ 0.76
CCDC28A-201ENST00000332797 TAF5LO75529 589 aa19.82■□□□□ 0.76
CCDC28A-201ENST00000332797 PTPN12Q05209 780 aaKnown RBP19.82■□□□□ 0.76
CCDC28A-201ENST00000332797 MTX1Q13505 466 aa19.82■□□□□ 0.76
CCDC28A-201ENST00000332797 LRRC24Q50LG9 513 aa19.82■□□□□ 0.76
CCDC28A-201ENST00000332797 ZNF784Q8NCA9 323 aaPredicted RBP19.82■□□□□ 0.76
CCDC28A-201ENST00000332797 KCNJ4P48050 445 aa19.81■□□□□ 0.76
CCDC28A-201ENST00000332797 ZC3H12CQ9C0D7 883 aaKnown RBP19.81■□□□□ 0.76
CCDC28A-201ENST00000332797 SIL1Q9H173 461 aa19.81■□□□□ 0.76
CCDC28A-201ENST00000332797 LEMD3Q9Y2U8 911 aa19.81■□□□□ 0.76
CCDC28A-201ENST00000332797 ZNF804BA4D1E1 1349 aa19.8■□□□□ 0.76
CCDC28A-201ENST00000332797 ZNF541Q9H0D2 1346 aa19.8■□□□□ 0.76
CCDC28A-201ENST00000332797 PA2G4Q9UQ80 394 aaKnown RBP19.8■□□□□ 0.76
CCDC28A-201ENST00000332797 RIPOR2Q9Y4F9 1068 aa19.8■□□□□ 0.76
CCDC28A-201ENST00000332797 MROH5Q6ZUA9 1318 aa19.8■□□□□ 0.76
CCDC28A-201ENST00000332797 PNMA6EA0A0J9YXQ4 647 aa19.79■□□□□ 0.76
CCDC28A-201ENST00000332797 FZD9O00144 591 aa19.79■□□□□ 0.76
CCDC28A-201ENST00000332797 METTL24Q5JXM2 366 aa19.79■□□□□ 0.76
CCDC28A-201ENST00000332797 DBNDD1Q9H9R9 158 aa19.79■□□□□ 0.76
CCDC28A-201ENST00000332797 MED23Q9ULK4 1368 aa19.79■□□□□ 0.76
CCDC28A-201ENST00000332797 GLTPD2A6NH11 291 aa19.79■□□□□ 0.76
CCDC28A-201ENST00000332797 SNAP23O00161 211 aa19.79■□□□□ 0.76
CCDC28A-201ENST00000332797 EYA2O00167 538 aa19.79■□□□□ 0.76
CCDC28A-201ENST00000332797 EIF6P56537 245 aaKnown RBP19.79■□□□□ 0.76
CCDC28A-201ENST00000332797 DOK7Q18PE1 504 aa19.79■□□□□ 0.76
CCDC28A-201ENST00000332797 DPY19L2Q6NUT2 758 aa19.79■□□□□ 0.76
CCDC28A-201ENST00000332797 CHMP4BQ9H444 224 aaKnown RBP19.79■□□□□ 0.76
CCDC28A-201ENST00000332797 ZNRF3Q9ULT6 936 aa19.79■□□□□ 0.76
CCDC28A-201ENST00000332797 KDM2BQ8NHM5 1336 aa19.78■□□□□ 0.76
CCDC28A-201ENST00000332797 G3V3G9 751 aa19.78■□□□□ 0.76
CCDC28A-201ENST00000332797 DCAF8Q5TAQ9 597 aa19.78■□□□□ 0.76
CCDC28A-201ENST00000332797 GPBP1L1Q9HC44 474 aaPredicted RBP19.78■□□□□ 0.76
CCDC28A-201ENST00000332797 COPRSQ9NQ92 184 aa19.78■□□□□ 0.76
CCDC28A-201ENST00000332797 ECE2O60344 883 aa19.77■□□□□ 0.76
CCDC28A-201ENST00000332797 KLRK1P26718 216 aa19.77■□□□□ 0.76
CCDC28A-201ENST00000332797 ZBTB40Q9NUA8 1239 aa19.77■□□□□ 0.76
CCDC28A-201ENST00000332797 CIAO1O76071 339 aa19.76■□□□□ 0.75
CCDC28A-201ENST00000332797 DDNO94850 711 aaPredicted RBP19.76■□□□□ 0.75
CCDC28A-201ENST00000332797 ATP8B2P98198 1209 aa19.76■□□□□ 0.75
CCDC28A-201ENST00000332797 CEP85Q6P2H3 762 aa19.76■□□□□ 0.75
CCDC28A-201ENST00000332797 ATG9AQ7Z3C6 839 aa19.76■□□□□ 0.75
CCDC28A-201ENST00000332797 FBXO3Q9UK99 471 aa19.76■□□□□ 0.75
CCDC28A-201ENST00000332797 YDJCA8MPS7 323 aa19.75■□□□□ 0.75
CCDC28A-201ENST00000332797 TXNRD3Q86VQ6 643 aa19.75■□□□□ 0.75
CCDC28A-201ENST00000332797 GJA3Q9Y6H8 435 aa19.75■□□□□ 0.75
CCDC28A-201ENST00000332797 RAD17O75943 681 aa19.74■□□□□ 0.75
CCDC28A-201ENST00000332797 POLA2Q14181 598 aa19.74■□□□□ 0.75
CCDC28A-201ENST00000332797 VGLL2Q8N8G2 317 aa19.74■□□□□ 0.75
CCDC28A-201ENST00000332797 SSH3Q8TE77 659 aa19.74■□□□□ 0.75
CCDC28A-201ENST00000332797 PDE8BO95263 885 aa19.73■□□□□ 0.75
CCDC28A-201ENST00000332797 IL15P40933 162 aaPredicted RBP19.73■□□□□ 0.75
CCDC28A-201ENST00000332797 CXCL9Q07325 125 aa19.73■□□□□ 0.75
CCDC28A-201ENST00000332797 UBE4AQ14139 1066 aa19.73■□□□□ 0.75
CCDC28A-201ENST00000332797 GPC2Q8N158 579 aa19.73■□□□□ 0.75
CCDC28A-201ENST00000332797 NMRK2Q9NPI5 230 aa19.73■□□□□ 0.75
CCDC28A-201ENST00000332797 SUPT16HQ9Y5B9 1047 aaKnown RBP19.73■□□□□ 0.75
CCDC28A-201ENST00000332797 CIAPIN1Q6FI81 312 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms