RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 DDB1Q16531 1140 aa9.54□□□□□ -0.88
CNOT4-201ENST00000315544 MEX3CQ5U5Q3 659 aaKnown RBP9.54□□□□□ -0.88
CNOT4-201ENST00000315544 TCRBV5S4A2TA0A5A2 114 aa9.54□□□□□ -0.88
CNOT4-201ENST00000315544 MCM2P49736 904 aa9.54□□□□□ -0.88
CNOT4-201ENST00000315544 USP48Q86UV5 1035 aa9.54□□□□□ -0.88
CNOT4-201ENST00000315544 DDX21Q9NR30 783 aaKnown RBP eCLIP9.54□□□□□ -0.88
CNOT4-201ENST00000315544 DBNLQ9UJU6 430 aaKnown RBP9.54□□□□□ -0.88
CNOT4-201ENST00000315544 GNAI3P08754 354 aa9.54□□□□□ -0.88
CNOT4-201ENST00000315544 ZSCAN30Q86W11 494 aa9.54□□□□□ -0.88
CNOT4-201ENST00000315544 TSPYL4Q9UJ04 414 aa9.54□□□□□ -0.88
CNOT4-201ENST00000315544 CSF1RP07333 972 aa9.53□□□□□ -0.88
CNOT4-201ENST00000315544 PTMSP20962 102 aa9.53□□□□□ -0.88
CNOT4-201ENST00000315544 PIGBQ92521 554 aa9.53□□□□□ -0.88
CNOT4-201ENST00000315544 ZNF512BQ96KM6 892 aaPredicted RBP9.53□□□□□ -0.88
CNOT4-201ENST00000315544 GOLGB1Q14789 3259 aaKnown RBP9.53□□□□□ -0.88
CNOT4-201ENST00000315544 HSCBQ8IWL3 235 aa9.53□□□□□ -0.88
CNOT4-201ENST00000315544 GPR108Q9NPR9 543 aa9.53□□□□□ -0.88
CNOT4-201ENST00000315544 PHIPQ8WWQ0 1821 aa9.53□□□□□ -0.88
CNOT4-201ENST00000315544 ZMYM6O95789 1325 aa9.53□□□□□ -0.88
CNOT4-201ENST00000315544 KIAA1524Q8TCG1 905 aa9.53□□□□□ -0.88
CNOT4-201ENST00000315544 DNAAF4Q8WXU2 420 aa9.53□□□□□ -0.88
CNOT4-201ENST00000315544 MRVI1Q9Y6F6 885 aa9.53□□□□□ -0.88
CNOT4-201ENST00000315544 OTOFQ9HC10 1997 aa9.53□□□□□ -0.88
CNOT4-201ENST00000315544 ATP5JP18859 108 aa9.52□□□□□ -0.88
CNOT4-201ENST00000315544 GCKRQ14397 625 aa9.52□□□□□ -0.88
CNOT4-201ENST00000315544 MED15Q96RN5 788 aa9.52□□□□□ -0.88
CNOT4-201ENST00000315544 TMX1Q9H3N1 280 aa9.52□□□□□ -0.88
CNOT4-201ENST00000315544 MAP3K15Q6ZN16 1313 aa9.52□□□□□ -0.89
CNOT4-201ENST00000315544 PI4KAP2A4QPH2 592 aa9.52□□□□□ -0.89
CNOT4-201ENST00000315544 SLC27A2O14975 620 aa9.52□□□□□ -0.89
CNOT4-201ENST00000315544 TTC6Q86TZ1 520 aa9.52□□□□□ -0.89
CNOT4-201ENST00000315544 PI4KAP1Q8N8J0 262 aa9.52□□□□□ -0.89
CNOT4-201ENST00000315544 HMGB2P26583 209 aaKnown RBP9.52□□□□□ -0.89
CNOT4-201ENST00000315544 BICC1Q9H694 974 aaKnown RBP9.52□□□□□ -0.89
CNOT4-201ENST00000315544 DOCK5Q9H7D0 1870 aa9.52□□□□□ -0.89
CNOT4-201ENST00000315544 SIP14410 1827 aa9.52□□□□□ -0.89
CNOT4-201ENST00000315544 F13A1P00488 732 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 ZSCAN22P10073 491 aaPredicted RBP9.51□□□□□ -0.89
CNOT4-201ENST00000315544 ITPK1Q13572 414 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 TMEM139Q8IV31 216 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 LINC00116Q8NCU8 138 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 SLC16A10Q8TF71 515 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 HAUS7Q99871 368 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 ISCA1Q9BUE6 129 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 TM4SF1P30408 202 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 EZH2Q15910 746 aaKnown RBP9.51□□□□□ -0.89
CNOT4-201ENST00000315544 CCDC93Q567U6 631 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 SARM1Q6SZW1 724 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 NYAP1Q6ZVC0 841 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 LINS1Q8NG48 757 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 FAM227BQ96M60 508 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 RTL9Q8NET4 1388 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 UVSSAQ2YD98 709 aa9.51□□□□□ -0.89
CNOT4-201ENST00000315544 APTXQ7Z2E3 356 aaKnown RBP9.51□□□□□ -0.89
CNOT4-201ENST00000315544 NUTM2GQ5VZR2 741 aa9.5□□□□□ -0.89
CNOT4-201ENST00000315544 ZNF790Q6PG37 636 aa9.5□□□□□ -0.89
CNOT4-201ENST00000315544 USHBP1Q8N6Y0 703 aa9.5□□□□□ -0.89
CNOT4-201ENST00000315544 METTL22Q9BUU2 404 aaPredicted RBP9.5□□□□□ -0.89
CNOT4-201ENST00000315544 FAM217BQ9NTX9 383 aaPredicted RBP9.5□□□□□ -0.89
CNOT4-201ENST00000315544 PCNTO95613 3336 aa9.5□□□□□ -0.89
CNOT4-201ENST00000315544 KCNQ2O43526 872 aa9.5□□□□□ -0.89
CNOT4-201ENST00000315544 MDM2Q00987 491 aaPredicted RBP9.5□□□□□ -0.89
CNOT4-201ENST00000315544 TRIM28Q13263 835 aaKnown RBP9.5□□□□□ -0.89
CNOT4-201ENST00000315544 NCAPHQ15003 741 aa9.5□□□□□ -0.89
CNOT4-201ENST00000315544 KIF1BPQ96EK5 621 aa9.5□□□□□ -0.89
CNOT4-201ENST00000315544 MYH8P13535 1937 aa9.5□□□□□ -0.89
CNOT4-201ENST00000315544 IFNL2Q8IZJ0 200 aa9.5□□□□□ -0.89
CNOT4-201ENST00000315544 PIBF1Q8WXW3 757 aa9.5□□□□□ -0.89
CNOT4-201ENST00000315544 SENP3Q9H4L4 574 aaPredicted RBP9.5□□□□□ -0.89
CNOT4-201ENST00000315544 REC8O95072 547 aa9.49□□□□□ -0.89
CNOT4-201ENST00000315544 DHX40Q8IX18 779 aaKnown RBP9.49□□□□□ -0.89
CNOT4-201ENST00000315544 ANTXR2P58335 489 aa9.49□□□□□ -0.89
CNOT4-201ENST00000315544 SLC15A2Q16348 729 aa9.49□□□□□ -0.89
CNOT4-201ENST00000315544 SPATA20Q8TB22 786 aa9.49□□□□□ -0.89
CNOT4-201ENST00000315544 JARID2Q92833 1246 aaPredicted RBP9.49□□□□□ -0.89
CNOT4-201ENST00000315544 GOLPH3LQ9H4A5 285 aa9.49□□□□□ -0.89
CNOT4-201ENST00000315544 BCL2L12Q9HB09 334 aa9.49□□□□□ -0.89
CNOT4-201ENST00000315544 RTN4Q9NQC3 1192 aaKnown RBP9.49□□□□□ -0.89
CNOT4-201ENST00000315544 WDR19Q8NEZ3 1342 aa9.49□□□□□ -0.89
CNOT4-201ENST00000315544 CPA1P15085 419 aa9.49□□□□□ -0.89
CNOT4-201ENST00000315544 CDC25BP30305 580 aa9.49□□□□□ -0.89
CNOT4-201ENST00000315544 TXNRD1Q16881 649 aa9.49□□□□□ -0.89
CNOT4-201ENST00000315544 CWF19L2Q2TBE0 894 aaKnown RBP9.49□□□□□ -0.89
CNOT4-201ENST00000315544 SCN9AQ15858 1988 aa9.49□□□□□ -0.89
CNOT4-201ENST00000315544 FGFR2P21802 821 aa9.48□□□□□ -0.89
CNOT4-201ENST00000315544 FECHP22830 423 aa9.48□□□□□ -0.89
CNOT4-201ENST00000315544 RPS6KB1P23443 525 aa9.48□□□□□ -0.89
CNOT4-201ENST00000315544 HAP1P54257 671 aaPredicted RBP9.48□□□□□ -0.89
CNOT4-201ENST00000315544 CREB3L3Q68CJ9 461 aa9.48□□□□□ -0.89
CNOT4-201ENST00000315544 HPSEQ9Y251 543 aa9.48□□□□□ -0.89
CNOT4-201ENST00000315544 EXOC5O00471 708 aa9.48□□□□□ -0.89
CNOT4-201ENST00000315544 CYP19A1P11511 503 aaPredicted RBP9.48□□□□□ -0.89
CNOT4-201ENST00000315544 DBF4Q9UBU7 674 aaPredicted RBP9.48□□□□□ -0.89
CNOT4-201ENST00000315544 SPG7Q9UQ90 795 aa9.48□□□□□ -0.89
CNOT4-201ENST00000315544 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.48□□□□□ -0.89
CNOT4-201ENST00000315544 CYP21A2P08686 494 aa9.48□□□□□ -0.89
CNOT4-201ENST00000315544 NTRK3Q16288 839 aa9.48□□□□□ -0.89
CNOT4-201ENST00000315544 CDC37L1Q7L3B6 337 aa9.48□□□□□ -0.89
CNOT4-201ENST00000315544 TDRD7Q8NHU6 1098 aaKnown RBP9.48□□□□□ -0.89
CNOT4-201ENST00000315544 GTF3C6Q969F1 213 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms