RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 CCER2I3L3R5 266 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 KDM1AO60341 852 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 KRT75O95678 551 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 RBM26Q5T8P6 1007 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 MFSD4BQ5TF39 518 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 RCSD1Q6JBY9 416 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 MCM10Q7L590 875 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 TERF2IPQ9NYB0 399 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 DBNLQ9UJU6 430 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 GRM1Q13255 1194 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 KRT73Q86Y46 540 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 P3H4Q92791 437 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 AIPL1Q9NZN9 384 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 CTTNBP2NLQ9P2B4 639 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 AFG3L2Q9Y4W6 797 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 GOLGA8RI6L899 631 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 PDE9AO76083 593 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 FOXD4Q12950 439 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 KRT222Q8N1A0 295 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 HAUS7Q99871 368 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 ARFGAP3Q9NP61 516 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 TSC22D4Q9Y3Q8 395 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 BAG2O95816 211 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 SNX1Q13596 522 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 RILPL1Q5EBL4 403 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 ATAD3BQ5T9A4 648 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 PNMA8AQ86V59 439 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 GOLGA1Q92805 767 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 HAUS1Q96CS2 278 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 SIRT1Q96EB6 747 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 CAPN11Q9UMQ6 739 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 MYCNP04198 464 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 CCDC30Q5VVM6 783 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 KRT80Q6KB66 452 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 TRIM39Q9HCM9 518 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 CDCA8Q53HL2 280 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 TDRD12Q587J7 1177 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 RAB11FIP4Q86YS3 637 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 GRPEL1Q9HAV7 217 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 PCP4L1A6NKN8 68 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 PHACTR2O75167 634 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 PAK3O75914 559 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 TROVE2P10155 538 aaKnown RBP eCLIP8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 MRRFQ96E11 262 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 SH3GL1Q99961 368 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 UBAC1Q9BSL1 405 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 SPC25Q9HBM1 224 aa8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 PUF60Q9UHX1 559 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-201ENST00000313860 CCDC69A6NI79 296 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 ZSCAN12O43309 604 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 KIAA0753Q2KHM9 967 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 CAPRIN2Q6IMN6 1127 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 MPHOSPH8Q99549 860 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 CTNNA3Q9UI47 895 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 ESPNB1AK53 854 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 RASEFQ8IZ41 740 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 VPS37AQ8NEZ2 397 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 SLC38A10Q9HBR0 1119 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 GJC1P36383 396 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 ESRRGP62508 458 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 KRT72Q14CN4 511 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 WASHC4Q2M389 1173 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 CLSTN2Q9H4D0 955 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 TEKT2Q9UIF3 430 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 TBKBP1A7MCY6 615 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 FGFR1OPO95684 399 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 KRT6AP02538 564 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 KRT6BP04259 564 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 NPR1P16066 1061 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 MSR1P21757 451 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 KRT6CP48668 564 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 OCRLQ01968 901 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 C16orf87Q6PH81 154 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 OTUD6AQ7L8S5 288 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 ARHGAP24Q8N264 748 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 ARL10Q8N8L6 244 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 FRMD6Q96NE9 622 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 KLHL31Q9H511 634 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 YY1AP1Q9H869 796 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 PHF8Q9UPP1 1060 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 TMA7Q9Y2S6 64 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 IGBP1P78318 339 aa8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 MRPL28Q13084 256 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 UTP14AQ9BVJ6 771 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 BIN2Q9UBW5 565 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 RPH3AQ9Y2J0 694 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-201ENST00000313860 ALDH3A1P30838 453 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 NONOQ15233 471 aaKnown RBP eCLIP8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 GSTA5Q7RTV2 222 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 MORC1Q86VD1 984 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 UPF3BQ9BZI7 483 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 IFIT2P09913 472 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 ZNF396Q96N95 335 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 RPSAP08865 295 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 PDE6AP16499 860 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 AKIRIN2Q53H80 203 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 C1orf94Q6P1W5 598 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 IQCDQ96DY2 449 aa8.61□□□□□ -1.03
LIMCH1-201ENST00000313860 SLC24A3Q9HC58 644 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms