RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 BCL2L13Q9BXK5 485 aa20.73■□□□□ 0.91
LSM1-201ENST00000311351 PODXL2Q9NZ53 605 aa20.73■□□□□ 0.91
LSM1-201ENST00000311351 ANKIB1Q9P2G1 1089 aa20.73■□□□□ 0.91
LSM1-201ENST00000311351 CIAPIN1Q6FI81 312 aa20.72■□□□□ 0.91
LSM1-201ENST00000311351 SSH1Q8WYL5 1049 aa20.72■□□□□ 0.91
LSM1-201ENST00000311351 A0A1B0GUL6 1792 aa20.72■□□□□ 0.91
LSM1-201ENST00000311351 GMPSP49915 693 aaPredicted RBP20.71■□□□□ 0.91
LSM1-201ENST00000311351 DOK7Q18PE1 504 aa20.71■□□□□ 0.91
LSM1-201ENST00000311351 EYA3Q99504 573 aa20.71■□□□□ 0.91
LSM1-201ENST00000311351 GGA1Q9UJY5 639 aa20.71■□□□□ 0.91
LSM1-201ENST00000311351 CLEC11AQ9Y240 323 aa20.71■□□□□ 0.91
LSM1-201ENST00000311351 XDHP47989 1333 aa20.71■□□□□ 0.91
LSM1-201ENST00000311351 ECE2O60344 883 aa20.7■□□□□ 0.9
LSM1-201ENST00000311351 ITGA6P23229 1130 aa20.7■□□□□ 0.9
LSM1-201ENST00000311351 PNMA8AQ86V59 439 aaPredicted RBP20.7■□□□□ 0.9
LSM1-201ENST00000311351 TRMT2AQ8IZ69 625 aaKnown RBP20.7■□□□□ 0.9
LSM1-201ENST00000311351 DNAJC5GQ8N7S2 189 aa20.7■□□□□ 0.9
LSM1-201ENST00000311351 PSME4Q14997 1843 aa20.69■□□□□ 0.9
LSM1-201ENST00000311351 GRM8O00222 908 aa20.69■□□□□ 0.9
LSM1-201ENST00000311351 CSF1RP07333 972 aa20.69■□□□□ 0.9
LSM1-201ENST00000311351 SRCIN1Q9C0H9 1055 aa20.69■□□□□ 0.9
LSM1-201ENST00000311351 BSDC1Q9NW68 430 aaPredicted RBP20.69■□□□□ 0.9
LSM1-201ENST00000311351 GPRC5DQ9NZD1 345 aa20.69■□□□□ 0.9
LSM1-201ENST00000311351 WTIPA6NIX2 430 aaPredicted RBP20.68■□□□□ 0.9
LSM1-201ENST00000311351 FOXO4P98177 505 aa20.68■□□□□ 0.9
LSM1-201ENST00000311351 TNIP1Q15025 636 aa20.68■□□□□ 0.9
LSM1-201ENST00000311351 EPHA10Q5JZY3 1008 aa20.68■□□□□ 0.9
LSM1-201ENST00000311351 MAP1SQ66K74 1059 aaPredicted RBP20.68■□□□□ 0.9
LSM1-201ENST00000311351 KCNQ5Q9NR82 932 aa20.68■□□□□ 0.9
LSM1-201ENST00000311351 MINPP1Q9UNW1 487 aa20.68■□□□□ 0.9
LSM1-201ENST00000311351 SHTN1A0MZ66 631 aa20.67■□□□□ 0.9
LSM1-201ENST00000311351 PSMD14O00487 310 aa20.67■□□□□ 0.9
LSM1-201ENST00000311351 ALDH1L1O75891 902 aa20.67■□□□□ 0.9
LSM1-201ENST00000311351 IGHMBP2P38935 993 aaKnown RBP20.67■□□□□ 0.9
LSM1-201ENST00000311351 MAPK8IP2Q13387 824 aaPredicted RBP20.67■□□□□ 0.9
LSM1-201ENST00000311351 ZC3H12CQ9C0D7 883 aaKnown RBP20.67■□□□□ 0.9
LSM1-201ENST00000311351 ZBTB12Q9Y330 459 aaPredicted RBP20.67■□□□□ 0.9
LSM1-201ENST00000311351 CHMP3Q9Y3E7 222 aa20.67■□□□□ 0.9
LSM1-201ENST00000311351 PASKQ96RG2 1323 aa20.67■□□□□ 0.9
LSM1-201ENST00000311351 SMC4Q9NTJ3 1288 aa20.66■□□□□ 0.9
LSM1-201ENST00000311351 C9orf78Q9NZ63 289 aaPredicted RBP20.66■□□□□ 0.9
LSM1-201ENST00000311351 PTPRCP08575 1304 aa20.66■□□□□ 0.9
LSM1-201ENST00000311351 ITGBL1O95965 494 aaPredicted RBP20.65■□□□□ 0.9
LSM1-201ENST00000311351 ATP2B4P23634 1241 aa20.65■□□□□ 0.9
LSM1-201ENST00000311351 ALDH1L2Q3SY69 923 aa20.65■□□□□ 0.9
LSM1-201ENST00000311351 ADARB2Q9NS39 739 aaKnown RBP20.65■□□□□ 0.9
LSM1-201ENST00000311351 ZNF646O15015 1829 aaPredicted RBP20.64■□□□□ 0.9
LSM1-201ENST00000311351 ANKRD18BA2A2Z9 1011 aa20.64■□□□□ 0.89
LSM1-201ENST00000311351 LMBR1LQ6UX01 489 aa20.64■□□□□ 0.89
LSM1-201ENST00000311351 USP50Q70EL3 339 aaPredicted RBP20.64■□□□□ 0.89
LSM1-201ENST00000311351 KLRG1Q96E93 195 aa20.64■□□□□ 0.89
LSM1-201ENST00000311351 SUCLG2Q96I99 432 aa20.64■□□□□ 0.89
LSM1-201ENST00000311351 MPHOSPH8Q99549 860 aa20.64■□□□□ 0.89
LSM1-201ENST00000311351 MED23Q9ULK4 1368 aa20.63■□□□□ 0.89
LSM1-201ENST00000311351 G3V3G9 751 aa20.63■□□□□ 0.89
LSM1-201ENST00000311351 CCT4P50991 539 aaKnown RBP20.63■□□□□ 0.89
LSM1-201ENST00000311351 DCAF8Q5TAQ9 597 aa20.63■□□□□ 0.89
LSM1-201ENST00000311351 CNTROBQ8N137 903 aa20.63■□□□□ 0.89
LSM1-201ENST00000311351 TRPM4Q8TD43 1214 aa20.63■□□□□ 0.89
LSM1-201ENST00000311351 NBPF7P0C2Y1 421 aaPredicted RBP20.62■□□□□ 0.89
LSM1-201ENST00000311351 IFIT5Q13325 482 aaKnown RBP20.62■□□□□ 0.89
LSM1-201ENST00000311351 MICALL2Q8IY33 904 aa20.62■□□□□ 0.89
LSM1-201ENST00000311351 CNOT7Q9UIV1 285 aaKnown RBP20.62■□□□□ 0.89
LSM1-201ENST00000311351 TRPM7Q96QT4 1865 aa20.61■□□□□ 0.89
LSM1-201ENST00000311351 KLRK1P26718 216 aa20.61■□□□□ 0.89
LSM1-201ENST00000311351 KAZALD1Q96I82 304 aa20.61■□□□□ 0.89
LSM1-201ENST00000311351 CREBZFQ9NS37 354 aa20.61■□□□□ 0.89
LSM1-201ENST00000311351 UTYO14607 1347 aa20.6■□□□□ 0.89
LSM1-201ENST00000311351 CT47B1P0C2W7 299 aaPredicted RBP20.6■□□□□ 0.89
LSM1-201ENST00000311351 HIRAP54198 1017 aaPredicted RBP20.6■□□□□ 0.89
LSM1-201ENST00000311351 FMR1Q06787 632 aaKnown RBP eCLIP20.6■□□□□ 0.89
LSM1-201ENST00000311351 CHRNDQ07001 517 aa20.6■□□□□ 0.89
LSM1-201ENST00000311351 TXNRD3Q86VQ6 643 aa20.6■□□□□ 0.89
LSM1-201ENST00000311351 ZNF594Q96JF6 807 aaPredicted RBP20.6■□□□□ 0.89
LSM1-201ENST00000311351 ZNF804BA4D1E1 1349 aa20.59■□□□□ 0.89
LSM1-201ENST00000311351 DPF2Q92785 391 aa20.59■□□□□ 0.89
LSM1-201ENST00000311351 ANKRD2Q9GZV1 360 aa20.59■□□□□ 0.89
LSM1-201ENST00000311351 SNAP23O00161 211 aa20.58■□□□□ 0.89
LSM1-201ENST00000311351 TRAF5O00463 557 aa20.58■□□□□ 0.89
LSM1-201ENST00000311351 EGFRP00533 1210 aa20.58■□□□□ 0.89
LSM1-201ENST00000311351 VIL1P09327 827 aaKnown RBP20.58■□□□□ 0.89
LSM1-201ENST00000311351 RPS12P25398 132 aaKnown RBP20.58■□□□□ 0.89
LSM1-201ENST00000311351 HNRNPUQ00839 825 aaKnown RBP eCLIP20.58■□□□□ 0.89
LSM1-201ENST00000311351 CCDC57Q2TAC2 916 aa20.58■□□□□ 0.89
LSM1-201ENST00000311351 SAMD7Q7Z3H4 446 aa20.58■□□□□ 0.89
LSM1-201ENST00000311351 HELBQ8NG08 1087 aaPredicted RBP20.58■□□□□ 0.89
LSM1-201ENST00000311351 BICC1Q9H694 974 aaKnown RBP20.58■□□□□ 0.89
LSM1-201ENST00000311351 LEMD3Q9Y2U8 911 aa20.58■□□□□ 0.89
LSM1-201ENST00000311351 TMEM88BA6NKF7 163 aa20.57■□□□□ 0.88
LSM1-201ENST00000311351 H7C1D1 291 aa20.57■□□□□ 0.88
LSM1-201ENST00000311351 ZNF609O15014 1411 aa20.57■□□□□ 0.88
LSM1-201ENST00000311351 TAF5LO75529 589 aa20.57■□□□□ 0.88
LSM1-201ENST00000311351 TBC1D10BQ4KMP7 808 aaPredicted RBP20.57■□□□□ 0.88
LSM1-201ENST00000311351 TAF7LQ5H9L4 462 aa20.57■□□□□ 0.88
LSM1-201ENST00000311351 MKRN1Q9UHC7 482 aaKnown RBP20.57■□□□□ 0.88
LSM1-201ENST00000311351 NOB1Q9ULX3 412 aaKnown RBP20.57■□□□□ 0.88
LSM1-201ENST00000311351 KCNJ4P48050 445 aa20.56■□□□□ 0.88
LSM1-201ENST00000311351 RARSP54136 660 aaKnown RBP20.56■□□□□ 0.88
LSM1-201ENST00000311351 ANKRD44Q8N8A2 993 aa20.56■□□□□ 0.88
LSM1-201ENST00000311351 JMYQ8N9B5 988 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms