RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 GNAI2P04899 355 aa13.75□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 RLBP1P12271 317 aa13.75□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 GPSM2P81274 684 aa13.75□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 LARGE2Q8N3Y3 721 aa13.75□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 JDP2Q8WYK2 163 aa13.75□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 VPS33BQ9H267 617 aa13.75□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 CNNM1Q9NRU3 951 aa13.75□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 GGA1Q9UJY5 639 aa13.75□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 UFL1O94874 794 aa13.74□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 AOC3Q16853 763 aa13.74□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 LDHAL6AQ6ZMR3 332 aa13.74□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 NIM1KQ8IY84 436 aa13.74□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 ANKRD44Q8N8A2 993 aa13.74□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 PANK1Q8TE04 598 aa13.74□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 RTFDC1Q9BY42 306 aaPredicted RBP13.74□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 ANKRD2Q9GZV1 360 aa13.74□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 CHMP4BQ9H444 224 aaKnown RBP13.74□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 PSME4Q14997 1843 aa13.74□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 MYH13Q9UKX3 1938 aa13.73□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 ATP2B4P23634 1241 aa13.73□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 KCNJ4P48050 445 aa13.73□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 PRELPP51888 382 aa13.73□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 MVPQ14764 893 aaKnown RBP13.73□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 WASHC4Q2M389 1173 aa13.73□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 ZNF594Q96JF6 807 aaPredicted RBP13.73□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 PODXL2Q9NZ53 605 aa13.73□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 DDX19BQ9UMR2 479 aa13.73□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 MINPP1Q9UNW1 487 aa13.73□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 KDM2BQ8NHM5 1336 aa13.72□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 G3V3G9 751 aa13.72□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 CHRNDQ07001 517 aa13.72□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 DCAF8Q5TAQ9 597 aa13.72□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 DPY19L2Q6NUT2 758 aa13.72□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 TBC1D16Q8TBP0 767 aa13.72□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 ZNF526Q8TF50 670 aaPredicted RBP13.72□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 COG6Q9Y2V7 657 aa13.72□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 RRP1P56182 461 aaKnown RBP13.71□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 EIF6P56537 245 aaKnown RBP13.71□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 KIAA2012Q0VF49 1180 aa13.71□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 PDE3AQ14432 1141 aa13.71□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 ZC3H12CQ9C0D7 883 aaKnown RBP13.71□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 POLLQ9UGP5 575 aa13.71□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 LEMD3Q9Y2U8 911 aa13.71□□□□□ -0.21
CSPG4P1Y-201ENST00000306641 SCN4AP35499 1836 aa13.71□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 WDR90Q96KV7 1748 aa13.7□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 MROH5Q6ZUA9 1318 aa13.7□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 COL4A5P29400 1685 aa13.7□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 RIMBP2O15034 1052 aa13.7□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 SRGAP3O43295 1099 aa13.7□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 ZNF784Q8NCA9 323 aaPredicted RBP13.7□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 GPBP1L1Q9HC44 474 aaPredicted RBP13.7□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 MED23Q9ULK4 1368 aa13.7□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 ZNF804BA4D1E1 1349 aa13.69□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 ZBTB7BO15156 539 aaPredicted RBP13.69□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 METTL24Q5JXM2 366 aa13.69□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 KLHDC4Q8TBB5 520 aa13.69□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 GPR101Q96P66 508 aaPredicted RBP13.69□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 C1orf115Q9H7X2 142 aa13.69□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 ARAP2Q8WZ64 1704 aa13.68□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 GLTPD2A6NH11 291 aa13.68□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 MTX1Q13505 466 aa13.68□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 HELBQ8NG08 1087 aaPredicted RBP13.68□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 PUS3Q9BZE2 481 aaKnown RBP13.68□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 SIL1Q9H173 461 aa13.68□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 FBXO3Q9UK99 471 aa13.68□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 ZNRF3Q9ULT6 936 aa13.68□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 SCN9AQ15858 1988 aa13.68□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 ZNF541Q9H0D2 1346 aa13.67□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 FZD9O00144 591 aa13.67□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 EYA2O00167 538 aa13.67□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 ECE2O60344 883 aa13.67□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 TAF5LO75529 589 aa13.67□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 RFX5P48382 616 aaPredicted RBP13.67□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 PTPN12Q05209 780 aaKnown RBP13.67□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 LRRC24Q50LG9 513 aa13.67□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 C20orf194Q5TEA3 1177 aa13.67□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 DBNDD1Q9H9R9 158 aa13.67□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 CIAO1O76071 339 aa13.66□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 DOK7Q18PE1 504 aa13.66□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 PA2G4Q9UQ80 394 aaKnown RBP13.66□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 RIPOR2Q9Y4F9 1068 aa13.66□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 GJA3Q9Y6H8 435 aa13.66□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 PNMA6EA0A0J9YXQ4 647 aa13.65□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 IL15P40933 162 aaPredicted RBP13.65□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 UBE4AQ14139 1066 aa13.65□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 TNIP1Q15025 636 aa13.65□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 CIAPIN1Q6FI81 312 aa13.65□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 GPC2Q8N158 579 aa13.65□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 COPRSQ9NQ92 184 aa13.65□□□□□ -0.22
CSPG4P1Y-201ENST00000306641 ZNF646O15015 1829 aaPredicted RBP13.64□□□□□ -0.23
CSPG4P1Y-201ENST00000306641 DDNO94850 711 aaPredicted RBP13.64□□□□□ -0.23
CSPG4P1Y-201ENST00000306641 PDE8BO95263 885 aa13.64□□□□□ -0.23
CSPG4P1Y-201ENST00000306641 LMOD1P29536 600 aaPredicted RBP13.64□□□□□ -0.23
CSPG4P1Y-201ENST00000306641 ATP8B2P98198 1209 aa13.64□□□□□ -0.23
CSPG4P1Y-201ENST00000306641 G3BP1Q13283 466 aaKnown RBP eCLIP13.64□□□□□ -0.23
CSPG4P1Y-201ENST00000306641 OS9Q13438 667 aaPredicted RBP13.64□□□□□ -0.23
CSPG4P1Y-201ENST00000306641 PUM3Q15397 648 aaKnown RBP13.64□□□□□ -0.23
CSPG4P1Y-201ENST00000306641 CEP85Q6P2H3 762 aa13.64□□□□□ -0.23
CSPG4P1Y-201ENST00000306641 ZNF804AQ7Z570 1209 aa13.64□□□□□ -0.23
CSPG4P1Y-201ENST00000306641 C16orf71Q8IYS4 520 aaPredicted RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms