RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 MYH3P11055 1940 aa7.87□□□□□ -1.15
USP47-201ENST00000305481 SCARF1Q14162 830 aa7.87□□□□□ -1.15
USP47-201ENST00000305481 LDHAL6AQ6ZMR3 332 aa7.87□□□□□ -1.15
USP47-201ENST00000305481 VGLL2Q8N8G2 317 aa7.87□□□□□ -1.15
USP47-201ENST00000305481 LINC00116Q8NCU8 138 aa7.87□□□□□ -1.15
USP47-201ENST00000305481 COL5A3P25940 1745 aaPredicted RBP7.87□□□□□ -1.15
USP47-201ENST00000305481 LARGE1O95461 756 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 IFIT1P09914 478 aaKnown RBP7.86□□□□□ -1.15
USP47-201ENST00000305481 HCLS1P14317 486 aaPredicted RBP7.86□□□□□ -1.15
USP47-201ENST00000305481 MCMDC2Q4G0Z9 681 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 TAF7LQ5H9L4 462 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 VPS53Q5VIR6 699 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 CHAMP1Q96JM3 812 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 LIMCH1Q9UPQ0 1083 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 ANKRD18BA2A2Z9 1011 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 ZKSCAN1P17029 563 aaPredicted RBP7.86□□□□□ -1.15
USP47-201ENST00000305481 TSGA10IPQ3SY00 556 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.86□□□□□ -1.15
USP47-201ENST00000305481 SMARCC1Q92922 1105 aaPredicted RBP7.86□□□□□ -1.15
USP47-201ENST00000305481 AKAP2Q9Y2D5 859 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 FAM177BA6PVY3 158 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 KCNJ4P48050 445 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 GZF1Q9H116 711 aaPredicted RBP7.86□□□□□ -1.15
USP47-201ENST00000305481 PDRG1Q9NUG6 133 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 USP21Q9UK80 565 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 CYP46A1Q9Y6A2 500 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 SH3TC1Q8TE82 1336 aa7.86□□□□□ -1.15
USP47-201ENST00000305481 METTL24Q5JXM2 366 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 ZMYM1Q5SVZ6 1142 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 SMIM5Q71RC9 77 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 ZNF831Q5JPB2 1677 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 NTSR2O95665 410 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 BRD1O95696 1058 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 ST3GAL1Q11201 340 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 FAM182BQ5T319 152 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 PI16Q6UXB8 463 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 UTP14AQ9BVJ6 771 aaKnown RBP7.85□□□□□ -1.15
USP47-201ENST00000305481 LRP5O75197 1615 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 FKBP4Q02790 459 aaKnown RBP eCLIP7.85□□□□□ -1.15
USP47-201ENST00000305481 ATP2B3Q16720 1220 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 CCDC158Q5M9N0 1113 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 AK7Q96M32 723 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 CNNM1Q9NRU3 951 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 HELLSQ9NRZ9 838 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 NIP7Q9Y221 180 aaKnown RBP eCLIP7.85□□□□□ -1.15
USP47-201ENST00000305481 THSD7AQ9UPZ6 1657 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 SPATA31A6Q5VVP1 1343 aa7.85□□□□□ -1.15
USP47-201ENST00000305481 SPEF2Q9C093 1822 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 RNF113AO15541 343 aaKnown RBP7.84□□□□□ -1.15
USP47-201ENST00000305481 DTNBO60941 627 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 PDE8BO95263 885 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 TTC39AQ5SRH9 613 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 FOXD4L5Q5VV16 416 aaPredicted RBP7.84□□□□□ -1.15
USP47-201ENST00000305481 TICAM2Q86XR7 235 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 FOXD4L4Q8WXT5 416 aaPredicted RBP7.84□□□□□ -1.15
USP47-201ENST00000305481 TCEANC2Q96MN5 208 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 SEC31BQ9NQW1 1179 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 TPCN1Q9ULQ1 816 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 DDX60Q8IY21 1712 aaKnown RBP7.84□□□□□ -1.15
USP47-201ENST00000305481 CYP21A2P08686 494 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 ZAP70P43403 619 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 ME3Q16798 604 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 PARP10Q53GL7 1025 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 GORABQ5T7V8 394 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 RNF20Q5VTR2 975 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 MCTP1Q6DN14 999 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 HMG20BQ9P0W2 317 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 MAST3O60307 1309 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 COL4A1P02462 1669 aa7.84□□□□□ -1.15
USP47-201ENST00000305481 A0A0G2JLW4 131 aa7.84□□□□□ -1.16
USP47-201ENST00000305481 M0R2C6 588 aa7.84□□□□□ -1.16
USP47-201ENST00000305481 RPS6KB1P23443 525 aa7.84□□□□□ -1.16
USP47-201ENST00000305481 MCAMP43121 646 aa7.84□□□□□ -1.16
USP47-201ENST00000305481 OSBP2Q969R2 916 aa7.84□□□□□ -1.16
USP47-201ENST00000305481 LMBRD1Q9NUN5 540 aa7.84□□□□□ -1.16
USP47-201ENST00000305481 EP400Q96L91 3159 aa7.83□□□□□ -1.16
USP47-201ENST00000305481 AKAP11Q9UKA4 1901 aa7.83□□□□□ -1.16
USP47-201ENST00000305481 FOXP2O15409 715 aa7.83□□□□□ -1.16
USP47-201ENST00000305481 FGFR2P21802 821 aa7.83□□□□□ -1.16
USP47-201ENST00000305481 PSMA5P28066 241 aa7.83□□□□□ -1.16
USP47-201ENST00000305481 TOB2Q14106 344 aaPredicted RBP7.83□□□□□ -1.16
USP47-201ENST00000305481 HELBQ8NG08 1087 aaPredicted RBP7.83□□□□□ -1.16
USP47-201ENST00000305481 ALDH8A1Q9H2A2 487 aaPredicted RBP7.83□□□□□ -1.16
USP47-201ENST00000305481 U3KPZ7 1027 aaPredicted RBP7.83□□□□□ -1.16
USP47-201ENST00000305481 BCORQ6W2J9 1755 aa7.83□□□□□ -1.16
USP47-201ENST00000305481 SNAP23O00161 211 aa7.83□□□□□ -1.16
USP47-201ENST00000305481 STOX1Q6ZVD7 989 aa7.83□□□□□ -1.16
USP47-201ENST00000305481 ZNF512BQ96KM6 892 aaPredicted RBP7.83□□□□□ -1.16
USP47-201ENST00000305481 BCL2L12Q9HB09 334 aa7.83□□□□□ -1.16
USP47-201ENST00000305481 ABCC12Q96J65 1359 aa7.83□□□□□ -1.16
USP47-201ENST00000305481 HSPD1P10809 573 aaKnown RBP7.82□□□□□ -1.16
USP47-201ENST00000305481 BLOC1S2Q6QNY1 142 aa7.82□□□□□ -1.16
USP47-201ENST00000305481 AMIGO3Q86WK7 504 aa7.82□□□□□ -1.16
USP47-201ENST00000305481 CCDC83Q8IWF9 413 aa7.82□□□□□ -1.16
USP47-201ENST00000305481 CNTNAP4Q9C0A0 1308 aa7.82□□□□□ -1.16
USP47-201ENST00000305481 FSD2A1L4K1 749 aa7.82□□□□□ -1.16
USP47-201ENST00000305481 BTAF1O14981 1849 aa7.82□□□□□ -1.16
USP47-201ENST00000305481 PHKA1P46020 1223 aa7.82□□□□□ -1.16
USP47-201ENST00000305481 SKOR2Q2VWA4 1001 aaPredicted RBP7.82□□□□□ -1.16
USP47-201ENST00000305481 CLEC4GQ6UXB4 293 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms