RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 HMMRO75330 724 aa11.79□□□□□ -0.52
RFX3-201ENST00000302303 BBOX1O75936 387 aa11.79□□□□□ -0.52
RFX3-201ENST00000302303 ANKRD18AQ8IVF6 992 aa11.79□□□□□ -0.52
RFX3-201ENST00000302303 ZNF622Q969S3 477 aaKnown RBP eCLIP11.79□□□□□ -0.52
RFX3-201ENST00000302303 CDC5LQ99459 802 aaKnown RBP11.79□□□□□ -0.52
RFX3-201ENST00000302303 FBXO3Q9UK99 471 aa11.79□□□□□ -0.52
RFX3-201ENST00000302303 SNAP23O00161 211 aa11.78□□□□□ -0.52
RFX3-201ENST00000302303 ALDH1B1P30837 517 aa11.78□□□□□ -0.52
RFX3-201ENST00000302303 PRPF40BQ6NWY9 871 aaKnown RBP11.78□□□□□ -0.52
RFX3-201ENST00000302303 PPP1R1BQ9UD71 204 aaPredicted RBP11.78□□□□□ -0.52
RFX3-201ENST00000302303 CHRNDQ07001 517 aa11.77□□□□□ -0.52
RFX3-201ENST00000302303 SP8Q8IXZ3 490 aa11.77□□□□□ -0.52
RFX3-201ENST00000302303 HELBQ8NG08 1087 aaPredicted RBP11.77□□□□□ -0.52
RFX3-201ENST00000302303 RHPN1Q8TCX5 695 aa11.77□□□□□ -0.52
RFX3-201ENST00000302303 CNKSR1Q969H4 720 aa11.77□□□□□ -0.52
RFX3-201ENST00000302303 GCC1Q96CN9 775 aa11.77□□□□□ -0.52
RFX3-201ENST00000302303 CCDC136Q96JN2 1154 aa11.77□□□□□ -0.52
RFX3-201ENST00000302303 ATP6V0A2Q9Y487 856 aa11.77□□□□□ -0.52
RFX3-201ENST00000302303 IRS2Q9Y4H2 1338 aa11.77□□□□□ -0.53
RFX3-201ENST00000302303 LRRC37AA6NMS7 1700 aa11.77□□□□□ -0.53
RFX3-201ENST00000302303 LTBP1Q14766 1721 aa11.77□□□□□ -0.53
RFX3-201ENST00000302303 SPEF2Q9C093 1822 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 PPEF1O14829 653 aaPredicted RBP11.76□□□□□ -0.53
RFX3-201ENST00000302303 SMARCA5O60264 1052 aaPredicted RBP11.76□□□□□ -0.53
RFX3-201ENST00000302303 RAB11FIP3O75154 756 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 FGFR2P21802 821 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 IGHMBP2P38935 993 aaKnown RBP11.76□□□□□ -0.53
RFX3-201ENST00000302303 IL15P40933 162 aaPredicted RBP11.76□□□□□ -0.53
RFX3-201ENST00000302303 TFCP2Q12800 502 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 TTLL6Q8N841 843 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 PIM2Q9P1W9 311 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 A0A1B0GUL6 1792 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 TAF5LO75529 589 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 PDE8BO95263 885 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 GPSM2P81274 684 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 NUCB1Q02818 461 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 G3BP1Q13283 466 aaKnown RBP eCLIP11.76□□□□□ -0.53
RFX3-201ENST00000302303 TAF7LQ5H9L4 462 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 SKAP1Q86WV1 359 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 C16orf71Q8IYS4 520 aaPredicted RBP11.76□□□□□ -0.53
RFX3-201ENST00000302303 KLHL34Q8N239 644 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 EAF2Q96CJ1 260 aaPredicted RBP11.76□□□□□ -0.53
RFX3-201ENST00000302303 MPHOSPH8Q99549 860 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 CNNM1Q9NRU3 951 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 RNF216Q9NWF9 866 aaPredicted RBP11.76□□□□□ -0.53
RFX3-201ENST00000302303 PODXL2Q9NZ53 605 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 WWC3Q9ULE0 1092 aa11.76□□□□□ -0.53
RFX3-201ENST00000302303 UTRNP46939 3433 aa11.75□□□□□ -0.53
RFX3-201ENST00000302303 DUOX1Q9NRD9 1551 aa11.75□□□□□ -0.53
RFX3-201ENST00000302303 CENPQQ7L2Z9 268 aaPredicted RBP11.75□□□□□ -0.53
RFX3-201ENST00000302303 IL1RAPL2Q9NP60 686 aa11.75□□□□□ -0.53
RFX3-201ENST00000302303 MROH5Q6ZUA9 1318 aa11.75□□□□□ -0.53
RFX3-201ENST00000302303 SALL3Q9BXA9 1300 aa11.75□□□□□ -0.53
RFX3-201ENST00000302303 APBB1O00213 710 aa11.74□□□□□ -0.53
RFX3-201ENST00000302303 C21orf2O43822 256 aa11.74□□□□□ -0.53
RFX3-201ENST00000302303 PDE4AP27815 886 aa11.74□□□□□ -0.53
RFX3-201ENST00000302303 TIMM10P62072 90 aa11.74□□□□□ -0.53
RFX3-201ENST00000302303 HSP90AB4PQ58FF6 505 aa11.74□□□□□ -0.53
RFX3-201ENST00000302303 TMC4Q7Z404 712 aa11.74□□□□□ -0.53
RFX3-201ENST00000302303 KIF1BPQ96EK5 621 aa11.74□□□□□ -0.53
RFX3-201ENST00000302303 GPR108Q9NPR9 543 aa11.74□□□□□ -0.53
RFX3-201ENST00000302303 POLLQ9UGP5 575 aa11.74□□□□□ -0.53
RFX3-201ENST00000302303 CACNA1SQ13698 1873 aa11.73□□□□□ -0.53
RFX3-201ENST00000302303 DALRD3Q5D0E6 543 aaKnown RBP11.73□□□□□ -0.53
RFX3-201ENST00000302303 METTL24Q5JXM2 366 aa11.73□□□□□ -0.53
RFX3-201ENST00000302303 ANKRD45Q5TZF3 282 aa11.73□□□□□ -0.53
RFX3-201ENST00000302303 TXNRD3Q86VQ6 643 aa11.73□□□□□ -0.53
RFX3-201ENST00000302303 OTUD7AQ8TE49 926 aaPredicted RBP11.73□□□□□ -0.53
RFX3-201ENST00000302303 LRRCC1Q9C099 1032 aa11.73□□□□□ -0.53
RFX3-201ENST00000302303 FOXD4L1Q9NU39 408 aa11.73□□□□□ -0.53
RFX3-201ENST00000302303 TLR7Q9NYK1 1049 aaKnown RBP11.73□□□□□ -0.53
RFX3-201ENST00000302303 CEP126Q9P2H0 1117 aa11.73□□□□□ -0.53
RFX3-201ENST00000302303 KLRK1P26718 216 aa11.72□□□□□ -0.53
RFX3-201ENST00000302303 PRELPP51888 382 aa11.72□□□□□ -0.53
RFX3-201ENST00000302303 TNNI3KQ59H18 835 aa11.72□□□□□ -0.53
RFX3-201ENST00000302303 CHD1LQ86WJ1 897 aa11.72□□□□□ -0.53
RFX3-201ENST00000302303 ERC1Q8IUD2 1116 aa11.72□□□□□ -0.53
RFX3-201ENST00000302303 TBC1D16Q8TBP0 767 aa11.72□□□□□ -0.53
RFX3-201ENST00000302303 RTFDC1Q9BY42 306 aaPredicted RBP11.72□□□□□ -0.53
RFX3-201ENST00000302303 ZNF219Q9P2Y4 722 aaPredicted RBP11.72□□□□□ -0.53
RFX3-201ENST00000302303 FPGT-TNNI3KV9GXZ4 949 aa11.72□□□□□ -0.53
RFX3-201ENST00000302303 ZNF609O15014 1411 aa11.71□□□□□ -0.53
RFX3-201ENST00000302303 XDHP47989 1333 aa11.71□□□□□ -0.53
RFX3-201ENST00000302303 A0A1B0GUL7 405 aa11.71□□□□□ -0.53
RFX3-201ENST00000302303 YBX3P16989 372 aaKnown RBP eCLIP11.71□□□□□ -0.53
RFX3-201ENST00000302303 ADORA1P30542 326 aa11.71□□□□□ -0.53
RFX3-201ENST00000302303 GPR101Q96P66 508 aaPredicted RBP11.71□□□□□ -0.53
RFX3-201ENST00000302303 LNPKQ9C0E8 428 aa11.71□□□□□ -0.53
RFX3-201ENST00000302303 ANKRD2Q9GZV1 360 aa11.71□□□□□ -0.53
RFX3-201ENST00000302303 DBNLQ9UJU6 430 aaKnown RBP11.71□□□□□ -0.53
RFX3-201ENST00000302303 NSFL1CQ9UNZ2 370 aaKnown RBP11.71□□□□□ -0.53
RFX3-201ENST00000302303 OS9Q13438 667 aaPredicted RBP11.7□□□□□ -0.54
RFX3-201ENST00000302303 UBE4AQ14139 1066 aa11.7□□□□□ -0.54
RFX3-201ENST00000302303 C15orf52Q6ZUT6 534 aaKnown RBP11.7□□□□□ -0.54
RFX3-201ENST00000302303 MPNDQ8N594 471 aa11.7□□□□□ -0.54
RFX3-201ENST00000302303 DBNDD2Q9BQY9 259 aa11.7□□□□□ -0.54
RFX3-201ENST00000302303 CCDC8Q9H0W5 538 aaPredicted RBP11.7□□□□□ -0.54
RFX3-201ENST00000302303 BCS1LQ9Y276 419 aa11.7□□□□□ -0.54
RFX3-201ENST00000302303 LEMD3Q9Y2U8 911 aa11.7□□□□□ -0.54
RFX3-201ENST00000302303 ZNF804BA4D1E1 1349 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms