RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 GOLGA6DP0CG33 693 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 GOLGA6AQ9NYA3 693 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 ZNF165P49910 485 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 ZSCAN26Q16670 478 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 RUFY3Q7L099 469 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 PRPF38AQ8NAV1 312 aaKnown RBP5.48□□□□□ -1.53
CSMD3-201ENST00000297405 ANKRD24Q8TF21 1146 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 DTNBO60941 627 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 MRPS25P82663 173 aaKnown RBP5.48□□□□□ -1.53
CSMD3-201ENST00000297405 PPP1R21Q6ZMI0 780 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 NACAP1Q9BZK3 213 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 TNNC1P63316 161 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 BICDL1Q6ZP65 573 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 IFT20Q8IY31 132 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 GKAP1Q5VSY0 366 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-201ENST00000297405 KRBA2Q6ZNG9 492 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 PIBF1Q8WXW3 757 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 TBC1D2BQ9UPU7 963 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 MXRA7P84157 204 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 CCDC26Q8TAB7 109 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 TOMM22Q9NS69 142 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 EPS15L1Q9UBC2 864 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 SKIP12755 728 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 JADE2Q9NQC1 790 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 PARP2Q9UGN5 583 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 MAATS1Q7Z4T9 603 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 MCF2L2Q86YR7 1114 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 GOLGA8AA7E2F4 631 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 GOLGA8BA8MQT2 603 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 NUP88Q99567 741 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-201ENST00000297405 TOP2AP11388 1531 aaKnown RBP5.48□□□□□ -1.53
CSMD3-201ENST00000297405 FRMD3A2A2Y4 597 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 KRT18P05783 430 aaKnown RBP5.48□□□□□ -1.53
CSMD3-201ENST00000297405 EXOC4Q96A65 974 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 MRGBPQ9NV56 204 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 CALCOCO2Q13137 446 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 MAPK8IP2Q13387 824 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-201ENST00000297405 KRI1Q8N9T8 703 aaKnown RBP5.48□□□□□ -1.53
CSMD3-201ENST00000297405 KCNG4Q8TDN1 519 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 CCDC113Q9H0I3 377 aa5.48□□□□□ -1.53
CSMD3-201ENST00000297405 SKIDA1Q1XH10 827 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 LARP1Q6PKG0 1096 aaKnown RBP5.47□□□□□ -1.53
CSMD3-201ENST00000297405 SNX21Q969T3 373 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 MCUR1Q96AQ8 359 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 SAAL1Q96ER3 474 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 E9PMD0 336 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 CREB3O43889 395 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 ICE2Q659A1 982 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 TUBA8Q9NY65 449 aaPredicted RBP5.47□□□□□ -1.53
CSMD3-201ENST00000297405 ABCC11Q96J66 1382 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 FYCO1Q9BQS8 1478 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 BLOC1S2Q6QNY1 142 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 HMG20BQ9P0W2 317 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 HECW1Q76N89 1606 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 WASHC4Q2M389 1173 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 CCDC144CPQ8IYA2 1237 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 SPAG5Q96R06 1193 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 GPRASP1Q5JY77 1395 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 SNCBQ16143 134 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 HELBQ8NG08 1087 aaPredicted RBP5.47□□□□□ -1.53
CSMD3-201ENST00000297405 ATP2A3Q93084 1043 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 HAUS2Q9NVX0 235 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 TEKT2Q9UIF3 430 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 ATP5HO75947 161 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 RIPPLY1Q0D2K3 151 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 NBPF20Q3BBV1 942 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 RAPGEF4Q8WZA2 1011 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 SCOCQ9UIL1 159 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 DHX57Q6P158 1386 aaKnown RBP5.47□□□□□ -1.53
CSMD3-201ENST00000297405 MX1P20591 662 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 SPTBN2O15020 2390 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 APBB1O00213 710 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 INTS4Q96HW7 963 aaKnown RBP5.47□□□□□ -1.53
CSMD3-201ENST00000297405 UBA5Q9GZZ9 404 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 ODF2LQ9ULJ1 636 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 GNG11P61952 73 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 SDCCAG8Q86SQ7 713 aaPredicted RBP5.47□□□□□ -1.53
CSMD3-201ENST00000297405 JRKLQ9Y4A0 524 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 FAM71BQ8TC56 605 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 STRN4Q9NRL3 753 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 CTTNBP2Q8WZ74 1663 aa5.47□□□□□ -1.53
CSMD3-201ENST00000297405 CCDC102BQ68D86 513 aa5.46□□□□□ -1.53
CSMD3-201ENST00000297405 FOXD4L1Q9NU39 408 aa5.46□□□□□ -1.53
CSMD3-201ENST00000297405 C4BPBP20851 252 aa5.46□□□□□ -1.53
CSMD3-201ENST00000297405 MPHOSPH9Q99550 1183 aa5.46□□□□□ -1.53
CSMD3-201ENST00000297405 PRDM10Q9NQV6 1147 aa5.46□□□□□ -1.53
CSMD3-201ENST00000297405 CHCHD3Q9NX63 227 aaKnown RBP5.46□□□□□ -1.53
CSMD3-201ENST00000297405 UBE4BO95155 1302 aa5.46□□□□□ -1.53
CSMD3-201ENST00000297405 ADGBQ8N7X0 1667 aa5.46□□□□□ -1.53
CSMD3-201ENST00000297405 RAB11FIP3O75154 756 aa5.46□□□□□ -1.53
CSMD3-201ENST00000297405 KLHDC4Q8TBB5 520 aa5.46□□□□□ -1.53
CSMD3-201ENST00000297405 CACTINQ8WUQ7 758 aaKnown RBP5.46□□□□□ -1.53
CSMD3-201ENST00000297405 DOCK10Q96BY6 2186 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 COG7P83436 770 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 DHX9Q08211 1270 aaKnown RBP5.46□□□□□ -1.54
CSMD3-201ENST00000297405 UBE4AQ14139 1066 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 FBXW7Q969H0 707 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 OLFM3Q96PB7 478 aa5.46□□□□□ -1.54
CSMD3-201ENST00000297405 ACTR5Q9H9F9 607 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-201ENST00000297405 MUM1Q2TAK8 710 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms