RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 HSPA1LP34931 641 aa13.31□□□□□ -0.28
SHROOM3-201ENST00000296043 RANBP1P43487 201 aa13.31□□□□□ -0.28
SHROOM3-201ENST00000296043 AFMP43652 599 aa13.31□□□□□ -0.28
SHROOM3-201ENST00000296043 RNASE9P60153 205 aaKnown RBP13.31□□□□□ -0.28
SHROOM3-201ENST00000296043 RRAGBQ5VZM2 374 aa13.31□□□□□ -0.28
SHROOM3-201ENST00000296043 ERCC5P28715 1186 aaPredicted RBP13.31□□□□□ -0.28
SHROOM3-201ENST00000296043 CCDC102BQ68D86 513 aa13.31□□□□□ -0.28
SHROOM3-201ENST00000296043 UTP14AQ9BVJ6 771 aaKnown RBP13.31□□□□□ -0.28
SHROOM3-201ENST00000296043 FCHSD2O94868 740 aa13.31□□□□□ -0.28
SHROOM3-201ENST00000296043 KLHDC4Q8TBB5 520 aa13.31□□□□□ -0.28
SHROOM3-201ENST00000296043 CABP2Q9NPB3 220 aa13.31□□□□□ -0.28
SHROOM3-201ENST00000296043 POLD1P28340 1107 aa13.31□□□□□ -0.28
SHROOM3-201ENST00000296043 ZC4H2Q9NQZ6 224 aa13.31□□□□□ -0.28
SHROOM3-201ENST00000296043 MIA2Q96PC5 1412 aa13.31□□□□□ -0.28
SHROOM3-201ENST00000296043 GNGT1P63211 74 aa13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 PPP1R9BQ96SB3 815 aa13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 DACT1Q9NYF0 836 aa13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 LRRD1A4D1F6 860 aa13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 NECAB1Q8N987 351 aa13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 MGARPQ8TDB4 240 aa13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 DDX21Q9NR30 783 aaKnown RBP eCLIP13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 CNNM1Q9NRU3 951 aa13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 PLEKHH2Q8IVE3 1493 aa13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 MMRN2Q9H8L6 949 aa13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 NAPGQ99747 312 aaPredicted RBP13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 EFCC1Q9HA90 598 aa13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 POLA1P09884 1462 aaPredicted RBP13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 TMX3Q96JJ7 454 aa13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 RTL1A6NKG5 1358 aa13.3□□□□□ -0.28
SHROOM3-201ENST00000296043 CCDC122Q5T0U0 273 aa13.29□□□□□ -0.28
SHROOM3-201ENST00000296043 DUSP27Q5VZP5 1158 aa13.29□□□□□ -0.28
SHROOM3-201ENST00000296043 SSRP1Q08945 709 aaKnown RBP13.29□□□□□ -0.28
SHROOM3-201ENST00000296043 UAP1Q16222 522 aaPredicted RBP13.29□□□□□ -0.28
SHROOM3-201ENST00000296043 CTAGE1Q96RT6 745 aa13.29□□□□□ -0.28
SHROOM3-201ENST00000296043 KRT86O43790 486 aa13.29□□□□□ -0.28
SHROOM3-201ENST00000296043 PPANQ9NQ55 473 aaKnown RBP13.29□□□□□ -0.28
SHROOM3-201ENST00000296043 CCDC92Q53HC0 331 aaPredicted RBP13.29□□□□□ -0.28
SHROOM3-201ENST00000296043 TTC19Q6DKK2 380 aaPredicted RBP13.29□□□□□ -0.28
SHROOM3-201ENST00000296043 NAA16Q6N069 864 aaPredicted RBP13.29□□□□□ -0.28
SHROOM3-201ENST00000296043 VSIG1Q86XK7 387 aa13.29□□□□□ -0.28
SHROOM3-201ENST00000296043 SEC63Q9UGP8 760 aaKnown RBP13.29□□□□□ -0.28
SHROOM3-201ENST00000296043 PPP1R7Q15435 360 aa13.29□□□□□ -0.28
SHROOM3-201ENST00000296043 IDEP14735 1019 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 SLFN5Q08AF3 891 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 SMC1BQ8NDV3 1235 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 HIP1RO75146 1068 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 GIGYF1O75420 1035 aaPredicted RBP13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 RASIP1Q5U651 963 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 ATP1A2P50993 1020 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 ICE2Q659A1 982 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 CABS1Q96KC9 395 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 RAB3IPQ96QF0 476 aaPredicted RBP13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 EXOC1Q9NV70 894 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 GPRASP1Q5JY77 1395 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 UBXN1Q04323 297 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 CCT5P48643 541 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 VPS52Q8N1B4 723 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 TBC1D5Q92609 795 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 MTRF1LQ9UGC7 380 aaKnown RBP13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 TUBBP07437 444 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 ACTN2P35609 894 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 SPATS2Q86XZ4 545 aaKnown RBP13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 MRRFQ96E11 262 aaKnown RBP13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 GNL3LQ9NVN8 582 aaKnown RBP13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 TNNC1P63316 161 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 SF3B2Q13435 895 aaKnown RBP13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 ANKRD24Q8TF21 1146 aa13.28□□□□□ -0.28
SHROOM3-201ENST00000296043 hCG_2014768A0A024R1R8 64 aa13.27□□□□□ -0.28
SHROOM3-201ENST00000296043 BAG2O95816 211 aa13.27□□□□□ -0.28
SHROOM3-201ENST00000296043 HDGFL1Q5TGJ6 251 aa13.27□□□□□ -0.28
SHROOM3-201ENST00000296043 FERMT2Q96AC1 680 aa13.27□□□□□ -0.28
SHROOM3-201ENST00000296043 BAG1Q99933 345 aaPredicted RBP13.27□□□□□ -0.28
SHROOM3-201ENST00000296043 CCDC196A0A1B0GTZ2 297 aa13.27□□□□□ -0.28
SHROOM3-201ENST00000296043 PDCD7Q8N8D1 485 aaKnown RBP13.27□□□□□ -0.28
SHROOM3-201ENST00000296043 MRPS27Q92552 414 aaKnown RBP13.27□□□□□ -0.28
SHROOM3-201ENST00000296043 LRPPRCP42704 1394 aaKnown RBP13.27□□□□□ -0.29
SHROOM3-201ENST00000296043 CFAP65Q6ZU64 1925 aaKnown RBP13.27□□□□□ -0.29
SHROOM3-201ENST00000296043 MARCKSP29966 332 aaPredicted RBP13.27□□□□□ -0.29
SHROOM3-201ENST00000296043 POLE2P56282 527 aa13.27□□□□□ -0.29
SHROOM3-201ENST00000296043 DACT3Q96B18 629 aaPredicted RBP13.27□□□□□ -0.29
SHROOM3-201ENST00000296043 CREB3O43889 395 aa13.27□□□□□ -0.29
SHROOM3-201ENST00000296043 NUTM2GQ5VZR2 741 aa13.27□□□□□ -0.29
SHROOM3-201ENST00000296043 EEF2P13639 858 aaKnown RBP13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 GAS2L2Q8NHY3 880 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 ZNF75DP51815 510 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 RNF8O76064 485 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 C8orf34Q49A92 452 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 KLHL34Q8N239 644 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 KRT83P78385 493 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 IGHDP01880 384 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 PDE11AQ9HCR9 933 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 PPFIA1Q13136 1202 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 PDE6BP35913 854 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 C8orf74Q6P047 294 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 SMARCC2Q8TAQ2 1214 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 SLC12A7Q9Y666 1083 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 MCTP2Q6DN12 878 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 TSGA10Q9BZW7 698 aa13.26□□□□□ -0.29
SHROOM3-201ENST00000296043 PPP1R9AQ9ULJ8 1098 aa13.25□□□□□ -0.29
SHROOM3-201ENST00000296043 SPECC1L-ADORA2AF8WAN1 911 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms