RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 CCDC40Q4G0X9 1142 aa21.32■■□□□ 1
PCDH1-201ENST00000287008 RBM17Q96I25 401 aaKnown RBP21.32■■□□□ 1
PCDH1-201ENST00000287008 RBM27Q9P2N5 1060 aaKnown RBP21.32■■□□□ 1
PCDH1-201ENST00000287008 ANAPC15P60006 121 aa21.32■■□□□ 1
PCDH1-201ENST00000287008 SYCP3Q8IZU3 236 aa21.32■■□□□ 1
PCDH1-201ENST00000287008 GDPD2Q9HCC8 539 aa21.32■■□□□ 1
PCDH1-201ENST00000287008 DCTPP1Q9H773 170 aa21.32■■□□□ 1
PCDH1-201ENST00000287008 TMEM2Q9UHN6 1383 aa21.32■■□□□ 1
PCDH1-201ENST00000287008 RNF113AO15541 343 aaKnown RBP21.31■■□□□ 1
PCDH1-201ENST00000287008 CEP85Q6P2H3 762 aa21.31■■□□□ 1
PCDH1-201ENST00000287008 ENOX2Q16206 610 aaKnown RBP21.31■■□□□ 1
PCDH1-201ENST00000287008 TDRD12Q587J7 1177 aaKnown RBP21.31■■□□□ 1
PCDH1-201ENST00000287008 MIGA1Q8NAN2 632 aa21.31■■□□□ 1
PCDH1-201ENST00000287008 ATP7AQ04656 1500 aa21.31■■□□□ 1
PCDH1-201ENST00000287008 TBCAO75347 108 aaKnown RBP21.31■■□□□ 1
PCDH1-201ENST00000287008 TFCP2Q12800 502 aa21.31■■□□□ 1
PCDH1-201ENST00000287008 NECAB1Q8N987 351 aa21.31■■□□□ 1
PCDH1-201ENST00000287008 B4DLN1 442 aa21.3■■□□□ 1
PCDH1-201ENST00000287008 MRPL12P52815 198 aaKnown RBP21.3■■□□□ 1
PCDH1-201ENST00000287008 HEATR3Q7Z4Q2 680 aa21.3■■□□□ 1
PCDH1-201ENST00000287008 USP21Q9UK80 565 aa21.3■■□□□ 1
PCDH1-201ENST00000287008 DISP1Q96F81 1524 aa21.3■■□□□ 1
PCDH1-201ENST00000287008 BIN1O00499 593 aa21.3■■□□□ 1
PCDH1-201ENST00000287008 LMOD1P29536 600 aaPredicted RBP21.3■■□□□ 1
PCDH1-201ENST00000287008 MAGEB6Q8N7X4 407 aa21.3■■□□□ 1
PCDH1-201ENST00000287008 CCDC191Q8NCU4 936 aa21.3■■□□□ 1
PCDH1-201ENST00000287008 TTC6Q86TZ1 520 aa21.29■■□□□ 1
PCDH1-201ENST00000287008 PRKCSHP14314 528 aaPredicted RBP21.29■■□□□ 1
PCDH1-201ENST00000287008 NMIQ13287 307 aaPredicted RBP21.29■■□□□ 1
PCDH1-201ENST00000287008 BICC1Q9H694 974 aaKnown RBP21.29■■□□□ 1
PCDH1-201ENST00000287008 PRC1O43663 620 aa21.29■■□□□ 1
PCDH1-201ENST00000287008 TMX3Q96JJ7 454 aa21.29■■□□□ 1
PCDH1-201ENST00000287008 TBC1D32Q96NH3 1257 aa21.29■■□□□ 1
PCDH1-201ENST00000287008 ARHGEF12Q9NZN5 1544 aa21.29■■□□□ 1
PCDH1-201ENST00000287008 HCLS1P14317 486 aaPredicted RBP21.29■■□□□ 1
PCDH1-201ENST00000287008 IL13P35225 146 aa21.29■■□□□ 1
PCDH1-201ENST00000287008 NAPAP54920 295 aa21.29■■□□□ 1
PCDH1-201ENST00000287008 SMARCC2Q8TAQ2 1214 aa21.29■■□□□ 1
PCDH1-201ENST00000287008 TNPO1Q92973 898 aaKnown RBP21.29■■□□□ 1
PCDH1-201ENST00000287008 CALM1P0DP23 149 aa21.28■■□□□ 1
PCDH1-201ENST00000287008 CALM2P0DP24 149 aa21.28■■□□□ 1
PCDH1-201ENST00000287008 CALM3P0DP25 149 aa21.28■■□□□ 1
PCDH1-201ENST00000287008 TNNI2P48788 182 aa21.28■■□□□ 1
PCDH1-201ENST00000287008 EYA2O00167 538 aa21.28■■□□□ 1
PCDH1-201ENST00000287008 DENND2AQ9ULE3 1009 aa21.28■■□□□ 1
PCDH1-201ENST00000287008 PLEKHG3A1L390 1219 aa21.28■■□□□ 1
PCDH1-201ENST00000287008 METTL22Q9BUU2 404 aaPredicted RBP21.28■■□□□ 1
PCDH1-201ENST00000287008 ZSCAN12O43309 604 aa21.28■■□□□ 1
PCDH1-201ENST00000287008 MAP7D2Q96T17 732 aa21.28■■□□□ 1
PCDH1-201ENST00000287008 C16orf71Q8IYS4 520 aaPredicted RBP21.27■■□□□ 1
PCDH1-201ENST00000287008 UFL1O94874 794 aa21.27■■□□□ 1
PCDH1-201ENST00000287008 A1BGP04217 495 aa21.27■■□□□ 1
PCDH1-201ENST00000287008 ZRSR2Q15696 482 aaKnown RBP21.27■■□□□ 1
PCDH1-201ENST00000287008 SLC52A2Q9HAB3 445 aa21.27■■□□□ 1
PCDH1-201ENST00000287008 CCDC87Q9NVE4 849 aa21.27■■□□□ 1
PCDH1-201ENST00000287008 ANKRD62A6NC57 917 aa21.27■■□□□ 1
PCDH1-201ENST00000287008 PER1O15534 1290 aaPredicted RBP21.27■■□□□ 1
PCDH1-201ENST00000287008 JAG2Q9Y219 1238 aa21.27■■□□□ 1
PCDH1-201ENST00000287008 DNAJC10Q8IXB1 793 aa21.27■□□□□ 0.99
PCDH1-201ENST00000287008 DDX17Q92841 729 aaKnown RBP21.27■□□□□ 0.99
PCDH1-201ENST00000287008 MAPKBP1O60336 1514 aa21.26■□□□□ 0.99
PCDH1-201ENST00000287008 CALML3P27482 149 aa21.26■□□□□ 0.99
PCDH1-201ENST00000287008 KIF2AO00139 706 aaPredicted RBP21.26■□□□□ 0.99
PCDH1-201ENST00000287008 Q6ZUG5 572 aa21.26■□□□□ 0.99
PCDH1-201ENST00000287008 NUP88Q99567 741 aaPredicted RBP21.26■□□□□ 0.99
PCDH1-201ENST00000287008 NEO1Q92859 1461 aa21.26■□□□□ 0.99
PCDH1-201ENST00000287008 PDE8AO60658 829 aa21.26■□□□□ 0.99
PCDH1-201ENST00000287008 YEATS4O95619 227 aa21.26■□□□□ 0.99
PCDH1-201ENST00000287008 USP8P40818 1118 aa21.26■□□□□ 0.99
PCDH1-201ENST00000287008 CCDC174Q6PII3 467 aa21.26■□□□□ 0.99
PCDH1-201ENST00000287008 CENPHQ9H3R5 247 aa21.26■□□□□ 0.99
PCDH1-201ENST00000287008 C6orf50Q9HD87 102 aa21.26■□□□□ 0.99
PCDH1-201ENST00000287008 BRPF3Q9ULD4 1205 aa21.26■□□□□ 0.99
PCDH1-201ENST00000287008 ITGA6P23229 1130 aa21.25■□□□□ 0.99
PCDH1-201ENST00000287008 LGR6Q9HBX8 967 aa21.25■□□□□ 0.99
PCDH1-201ENST00000287008 FAM114A1Q8IWE2 563 aa21.25■□□□□ 0.99
PCDH1-201ENST00000287008 USO1O60763 962 aaKnown RBP21.25■□□□□ 0.99
PCDH1-201ENST00000287008 LTKP29376 864 aa21.25■□□□□ 0.99
PCDH1-201ENST00000287008 SBNO2Q9Y2G9 1366 aa21.25■□□□□ 0.99
PCDH1-201ENST00000287008 SPDYE3A6NKU9 549 aa21.25■□□□□ 0.99
PCDH1-201ENST00000287008 H0YHG0 523 aa21.25■□□□□ 0.99
PCDH1-201ENST00000287008 CPLX3Q8WVH0 158 aa21.24■□□□□ 0.99
PCDH1-201ENST00000287008 ZBTB40Q9NUA8 1239 aa21.24■□□□□ 0.99
PCDH1-201ENST00000287008 HIBADHP31937 336 aaKnown RBP21.24■□□□□ 0.99
PCDH1-201ENST00000287008 SYKP43405 635 aa21.24■□□□□ 0.99
PCDH1-201ENST00000287008 BICD1Q96G01 975 aa21.24■□□□□ 0.99
PCDH1-201ENST00000287008 PLS1Q14651 629 aa21.24■□□□□ 0.99
PCDH1-201ENST00000287008 G2E3Q7L622 706 aa21.24■□□□□ 0.99
PCDH1-201ENST00000287008 TIMM10P62072 90 aa21.24■□□□□ 0.99
PCDH1-201ENST00000287008 UBE2HP62256 183 aa21.24■□□□□ 0.99
PCDH1-201ENST00000287008 KCNG4Q8TDN1 519 aa21.24■□□□□ 0.99
PCDH1-201ENST00000287008 RLBP1P12271 317 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 BAG6P46379 1132 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 ZNF165P49910 485 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 STX1AQ16623 288 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 TEX11Q8IYF3 940 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 TAX1BP1Q86VP1 789 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 UBXN4Q92575 508 aa21.23■□□□□ 0.99
PCDH1-201ENST00000287008 COL17A1Q9UMD9 1497 aaPredicted RBP21.23■□□□□ 0.99
PCDH1-201ENST00000287008 A0A1B0GUL7 405 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms