RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 VPS52Q8N1B4 723 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 HDAC9Q9UKV0 1011 aa9.89□□□□□ -0.83
NIPBL-201ENST00000282516 SH3BGRP55822 239 aaPredicted RBP9.88□□□□□ -0.83
NIPBL-201ENST00000282516 KCNG4Q8TDN1 519 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 BICDL2A1A5D9 508 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 PLCB3Q01970 1234 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 ARHGAP24Q8N264 748 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 PSMA7O14818 248 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 GEN1Q17RS7 908 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 CDCA7LQ96GN5 454 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 WDR70Q9NW82 654 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 GJC1P36383 396 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 SEL1L2Q5TEA6 688 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 RNF168Q8IYW5 571 aaPredicted RBP9.88□□□□□ -0.83
NIPBL-201ENST00000282516 STK10O94804 968 aaKnown RBP9.88□□□□□ -0.83
NIPBL-201ENST00000282516 PCK1P35558 622 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 CCDC89Q8N998 374 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 CUL4BQ13620 913 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 CCDC85AQ96PX6 553 aaPredicted RBP9.88□□□□□ -0.83
NIPBL-201ENST00000282516 IARSP41252 1262 aaKnown RBP9.88□□□□□ -0.83
NIPBL-201ENST00000282516 SRGAP1Q7Z6B7 1085 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 RSPH3Q86UC2 560 aa9.88□□□□□ -0.83
NIPBL-201ENST00000282516 MGEA5O60502 916 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 TAOK1Q7L7X3 1001 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 MICU3Q86XE3 530 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 PRAM1Q96QH2 718 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 MMRN2Q9H8L6 949 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 SKILP12757 684 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 CALCOCO2Q13137 446 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.87□□□□□ -0.83
NIPBL-201ENST00000282516 BUB1BO60566 1050 aaPredicted RBP9.87□□□□□ -0.83
NIPBL-201ENST00000282516 FAM13AO94988 1023 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 CCDC170Q8IYT3 715 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 CABP5Q9NP86 173 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 EXOC6BQ9Y2D4 811 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 I3L4J1 428 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 TNPO1Q92973 898 aaKnown RBP9.87□□□□□ -0.83
NIPBL-201ENST00000282516 KCNK9Q9NPC2 374 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 MTUS1Q9ULD2 1270 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 MROH2BQ7Z745 1585 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 ZEB2O60315 1214 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 NBPF7P0C2Y1 421 aaPredicted RBP9.87□□□□□ -0.83
NIPBL-201ENST00000282516 MCUR1Q96AQ8 359 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 GJB2P29033 226 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 ASIC1P78348 528 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 TAF12Q16514 161 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 PLCD3Q8N3E9 789 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 POTEDQ86YR6 584 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 TMOD3Q9NYL9 352 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 GIGYF1O75420 1035 aaPredicted RBP9.87□□□□□ -0.83
NIPBL-201ENST00000282516 ANKRD24Q8TF21 1146 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 HAUS2Q9NVX0 235 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 SMARCA4P51532 1647 aa9.87□□□□□ -0.83
NIPBL-201ENST00000282516 HDXQ7Z353 690 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 TMEM110-MUSTN1A8MSY1 372 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 PRR16Q569H4 304 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 EVI5LQ96CN4 794 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 GIPC1O14908 333 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 TMEM132EQ6IEE7 984 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 SYT1P21579 422 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 CCDC25Q86WR0 208 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 CCT2P78371 535 aaKnown RBP9.86□□□□□ -0.83
NIPBL-201ENST00000282516 GKAP1Q5VSY0 366 aaPredicted RBP9.86□□□□□ -0.83
NIPBL-201ENST00000282516 NEK11Q8NG66 645 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 SEPT10Q9P0V9 454 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 VPS18Q9P253 973 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 A6NNZ2 444 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 CLNS1AP54105 237 aaKnown RBP9.86□□□□□ -0.83
NIPBL-201ENST00000282516 TUBB8Q3ZCM7 444 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 C10orf67Q8IYJ2 551 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 USP16Q9Y5T5 823 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 A0A1B0GUL7 405 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 LDHCP07864 332 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 TMEM57Q8N5G2 664 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 SUDS3Q9H7L9 328 aaPredicted RBP9.86□□□□□ -0.83
NIPBL-201ENST00000282516 NFE2L2Q16236 605 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 NCOA7Q8NI08 942 aa9.86□□□□□ -0.83
NIPBL-201ENST00000282516 GUCY1B3Q02153 619 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 ALDH1L2Q3SY69 923 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 CDK19Q9BWU1 502 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 KRT23Q9C075 422 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 RASSF4Q9H2L5 321 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 BOLA2Q9H3K6 86 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 CCDC141Q6ZP82 1450 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 SMIM23A6NLE4 172 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 SSFA2P28290 1259 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 CAPZA3Q96KX2 299 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 C6orf50Q9HD87 102 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 ORC3Q9UBD5 711 aaPredicted RBP9.85□□□□□ -0.83
NIPBL-201ENST00000282516 DNAI1Q9UI46 699 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 SLC26A6Q9BXS9 759 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 CRNKL1Q9BZJ0 848 aaKnown RBP9.85□□□□□ -0.83
NIPBL-201ENST00000282516 E7EVH7 732 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 FAM200AQ8TCP9 573 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 C9orf84Q5VXU9 1444 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 RTL9Q8NET4 1388 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 NCOA2Q15596 1464 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 ERCC3P19447 782 aa9.85□□□□□ -0.83
NIPBL-201ENST00000282516 CCDC94Q9BW85 323 aaPredicted RBP9.85□□□□□ -0.83
NIPBL-201ENST00000282516 TSPY2A6NKD2 308 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms