RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 PRDM10Q9NQV6 1147 aa16.43■□□□□ 0.22
CD44-203ENST00000278386 ANKIB1Q9P2G1 1089 aa16.43■□□□□ 0.22
CD44-203ENST00000278386 G3V3G9 751 aa16.42■□□□□ 0.22
CD44-203ENST00000278386 PDE8AO60658 829 aa16.42■□□□□ 0.22
CD44-203ENST00000278386 LBX1P52954 281 aa16.42■□□□□ 0.22
CD44-203ENST00000278386 DOK7Q18PE1 504 aa16.42■□□□□ 0.22
CD44-203ENST00000278386 CCDC184Q52MB2 194 aa16.42■□□□□ 0.22
CD44-203ENST00000278386 DCAF8Q5TAQ9 597 aa16.42■□□□□ 0.22
CD44-203ENST00000278386 CST9Q5W186 159 aa16.42■□□□□ 0.22
CD44-203ENST00000278386 TSPYL6Q8N831 410 aa16.42■□□□□ 0.22
CD44-203ENST00000278386 TBC1D16Q8TBP0 767 aa16.42■□□□□ 0.22
CD44-203ENST00000278386 MAP3K2Q9Y2U5 619 aa16.42■□□□□ 0.22
CD44-203ENST00000278386 TLL2Q9Y6L7 1015 aa16.42■□□□□ 0.22
CD44-203ENST00000278386 HIRAP54198 1017 aaPredicted RBP16.41■□□□□ 0.22
CD44-203ENST00000278386 ZC3H15Q8WU90 426 aaKnown RBP16.41■□□□□ 0.22
CD44-203ENST00000278386 GGA1Q9UJY5 639 aa16.41■□□□□ 0.22
CD44-203ENST00000278386 NEXNQ0ZGT2 675 aa16.4■□□□□ 0.22
CD44-203ENST00000278386 TBC1D10BQ4KMP7 808 aaPredicted RBP16.4■□□□□ 0.22
CD44-203ENST00000278386 DPF2Q92785 391 aa16.4■□□□□ 0.22
CD44-203ENST00000278386 BEGAINQ9BUH8 593 aa16.4■□□□□ 0.22
CD44-203ENST00000278386 ZC3H12CQ9C0D7 883 aaKnown RBP16.4■□□□□ 0.22
CD44-203ENST00000278386 RTL9Q8NET4 1388 aa16.39■□□□□ 0.21
CD44-203ENST00000278386 PI4KAP2A4QPH2 592 aa16.39■□□□□ 0.21
CD44-203ENST00000278386 HSPA8P11142 646 aaKnown RBP16.39■□□□□ 0.21
CD44-203ENST00000278386 RPS12P25398 132 aaKnown RBP16.39■□□□□ 0.21
CD44-203ENST00000278386 CTSWP56202 376 aa16.39■□□□□ 0.21
CD44-203ENST00000278386 TWISTNBQ3B726 338 aaPredicted RBP16.39■□□□□ 0.21
CD44-203ENST00000278386 CDC37L1Q7L3B6 337 aa16.39■□□□□ 0.21
CD44-203ENST00000278386 SAMD7Q7Z3H4 446 aa16.39■□□□□ 0.21
CD44-203ENST00000278386 ANKRD18AQ8IVF6 992 aa16.39■□□□□ 0.21
CD44-203ENST00000278386 PI4KAP1Q8N8J0 262 aa16.39■□□□□ 0.21
CD44-203ENST00000278386 PODXL2Q9NZ53 605 aa16.39■□□□□ 0.21
CD44-203ENST00000278386 CCDC27Q2M243 656 aa16.38■□□□□ 0.21
CD44-203ENST00000278386 RBM26Q5T8P6 1007 aaKnown RBP16.38■□□□□ 0.21
CD44-203ENST00000278386 KSR2Q6VAB6 950 aa16.38■□□□□ 0.21
CD44-203ENST00000278386 WWC1Q8IX03 1113 aa16.38■□□□□ 0.21
CD44-203ENST00000278386 MRS2Q9HD23 443 aa16.38■□□□□ 0.21
CD44-203ENST00000278386 KCNQ5Q9NR82 932 aa16.38■□□□□ 0.21
CD44-203ENST00000278386 PGAP2Q9UHJ9 254 aa16.38■□□□□ 0.21
CD44-203ENST00000278386 XDHP47989 1333 aa16.38■□□□□ 0.21
CD44-203ENST00000278386 AOC2O75106 756 aa16.37■□□□□ 0.21
CD44-203ENST00000278386 IGKV5-2P06315 115 aa16.37■□□□□ 0.21
CD44-203ENST00000278386 KIF4BQ2VIQ3 1234 aa16.37■□□□□ 0.21
CD44-203ENST00000278386 SAPCD2Q86UD0 394 aa16.37■□□□□ 0.21
CD44-203ENST00000278386 USP48Q86UV5 1035 aa16.37■□□□□ 0.21
CD44-203ENST00000278386 CDC5LQ99459 802 aaKnown RBP16.37■□□□□ 0.21
CD44-203ENST00000278386 ZNF646O15015 1829 aaPredicted RBP16.36■□□□□ 0.21
CD44-203ENST00000278386 EGFRP00533 1210 aa16.36■□□□□ 0.21
CD44-203ENST00000278386 CWF19L2Q2TBE0 894 aaKnown RBP16.36■□□□□ 0.21
CD44-203ENST00000278386 KRT26Q7Z3Y9 468 aa16.36■□□□□ 0.21
CD44-203ENST00000278386 NEURL1BA8MQ27 555 aa16.35■□□□□ 0.21
CD44-203ENST00000278386 DCPSQ96C86 337 aaKnown RBP16.35■□□□□ 0.21
CD44-203ENST00000278386 GGA3Q9NZ52 723 aa16.35■□□□□ 0.21
CD44-203ENST00000278386 IL16Q14005 1332 aa16.35■□□□□ 0.21
CD44-203ENST00000278386 A0A1B0GUL6 1792 aa16.35■□□□□ 0.21
CD44-203ENST00000278386 ADM5C9JUS6 153 aa16.34■□□□□ 0.21
CD44-203ENST00000278386 ANP32CO43423 234 aa16.34■□□□□ 0.21
CD44-203ENST00000278386 SLC4A2P04920 1241 aa16.34■□□□□ 0.21
CD44-203ENST00000278386 VIL1P09327 827 aaKnown RBP16.34■□□□□ 0.21
CD44-203ENST00000278386 ATP2B4P23634 1241 aa16.34■□□□□ 0.21
CD44-203ENST00000278386 HUNKP57058 714 aa16.34■□□□□ 0.21
CD44-203ENST00000278386 G2E3Q7L622 706 aa16.34■□□□□ 0.21
CD44-203ENST00000278386 UBE3BQ7Z3V4 1068 aa16.34■□□□□ 0.21
CD44-203ENST00000278386 HHIPL1Q96JK4 782 aa16.34■□□□□ 0.21
CD44-203ENST00000278386 GREM2Q9H772 168 aa16.34■□□□□ 0.21
CD44-203ENST00000278386 TSKSQ9UJT2 592 aa16.34■□□□□ 0.21
CD44-203ENST00000278386 SALL2Q9Y467 1007 aaPredicted RBP16.34■□□□□ 0.21
CD44-203ENST00000278386 FANCIQ9NVI1 1328 aa16.34■□□□□ 0.21
CD44-203ENST00000278386 MAP2K2P36507 400 aa16.33■□□□□ 0.2
CD44-203ENST00000278386 FLIIQ13045 1269 aa16.33■□□□□ 0.2
CD44-203ENST00000278386 FKBP5Q13451 457 aaPredicted RBP16.33■□□□□ 0.2
CD44-203ENST00000278386 DLK2Q6UY11 383 aa16.33■□□□□ 0.2
CD44-203ENST00000278386 TTLL11Q8NHH1 800 aa16.33■□□□□ 0.2
CD44-203ENST00000278386 ZNF609O15014 1411 aa16.33■□□□□ 0.2
CD44-203ENST00000278386 AKAP11Q9UKA4 1901 aa16.33■□□□□ 0.2
CD44-203ENST00000278386 CASP8AP2Q9UKL3 1982 aa16.33■□□□□ 0.2
CD44-203ENST00000278386 RSBN1LQ6PCB5 846 aaPredicted RBP16.32■□□□□ 0.2
CD44-203ENST00000278386 SULF1Q8IWU6 871 aa16.32■□□□□ 0.2
CD44-203ENST00000278386 FBXW7Q969H0 707 aa16.32■□□□□ 0.2
CD44-203ENST00000278386 GBA2Q9HCG7 927 aaPredicted RBP16.32■□□□□ 0.2
CD44-203ENST00000278386 MED23Q9ULK4 1368 aa16.32■□□□□ 0.2
CD44-203ENST00000278386 ZEB1P37275 1124 aaPredicted RBP16.31■□□□□ 0.2
CD44-203ENST00000278386 IGHMBP2P38935 993 aaKnown RBP16.31■□□□□ 0.2
CD44-203ENST00000278386 C2orf69Q8N8R5 385 aa16.31■□□□□ 0.2
CD44-203ENST00000278386 AGBL3Q8NEM8 1001 aa16.31■□□□□ 0.2
CD44-203ENST00000278386 MYH16Q9H6N6 1097 aa16.31■□□□□ 0.2
CD44-203ENST00000278386 BSDC1Q9NW68 430 aaPredicted RBP16.31■□□□□ 0.2
CD44-203ENST00000278386 ASTN2O75129 1339 aaPredicted RBP16.3■□□□□ 0.2
CD44-203ENST00000278386 BRPF1P55201 1214 aaPredicted RBP16.3■□□□□ 0.2
CD44-203ENST00000278386 DNAAF4Q8WXU2 420 aa16.3■□□□□ 0.2
CD44-203ENST00000278386 MINPP1Q9UNW1 487 aa16.3■□□□□ 0.2
CD44-203ENST00000278386 PAPPA2Q9BXP8 1791 aa16.3■□□□□ 0.2
CD44-203ENST00000278386 USP17L3A6NCW0 530 aa16.29■□□□□ 0.2
CD44-203ENST00000278386 USP17L4A6NCW7 530 aa16.29■□□□□ 0.2
CD44-203ENST00000278386 CCT4P50991 539 aaKnown RBP16.29■□□□□ 0.2
CD44-203ENST00000278386 NOGQ13253 232 aa16.29■□□□□ 0.2
CD44-203ENST00000278386 GCKRQ14397 625 aa16.29■□□□□ 0.2
CD44-203ENST00000278386 FAM161AQ3B820 660 aa16.29■□□□□ 0.2
CD44-203ENST00000278386 ANGEL2Q5VTE6 544 aaKnown RBP16.29■□□□□ 0.2
CD44-203ENST00000278386 USP17L1Q7RTZ2 530 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms