RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 OSBPL3Q9H4L5 887 aa13.74□□□□□ -0.21
VPS4A-201ENST00000254950 CAMTA1Q9Y6Y1 1673 aa13.74□□□□□ -0.21
VPS4A-201ENST00000254950 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.74□□□□□ -0.21
VPS4A-201ENST00000254950 RBM5P52756 815 aaKnown RBP eCLIP13.74□□□□□ -0.21
VPS4A-201ENST00000254950 LRRC24Q50LG9 513 aa13.74□□□□□ -0.21
VPS4A-201ENST00000254950 ISCA1Q9BUE6 129 aa13.74□□□□□ -0.21
VPS4A-201ENST00000254950 MINDY4BA8MYZ0 360 aa13.73□□□□□ -0.21
VPS4A-201ENST00000254950 CIAO1O76071 339 aa13.73□□□□□ -0.21
VPS4A-201ENST00000254950 NFKBIBQ15653 356 aa13.73□□□□□ -0.21
VPS4A-201ENST00000254950 ZGPATQ8N5A5 531 aaKnown RBP13.73□□□□□ -0.21
VPS4A-201ENST00000254950 UBAC1Q9BSL1 405 aa13.73□□□□□ -0.21
VPS4A-201ENST00000254950 ATP10DQ9P241 1426 aa13.73□□□□□ -0.21
VPS4A-201ENST00000254950 RAD21O60216 631 aa13.73□□□□□ -0.21
VPS4A-201ENST00000254950 USP5P45974 858 aa13.73□□□□□ -0.21
VPS4A-201ENST00000254950 SAFBQ15424 915 aaKnown RBP eCLIP13.73□□□□□ -0.21
VPS4A-201ENST00000254950 USP26Q9BXU7 913 aa13.73□□□□□ -0.21
VPS4A-201ENST00000254950 PTPN12Q05209 780 aaKnown RBP13.73□□□□□ -0.21
VPS4A-201ENST00000254950 PDIA6Q15084 440 aa13.73□□□□□ -0.21
VPS4A-201ENST00000254950 L1TD1Q5T7N2 865 aaKnown RBP13.73□□□□□ -0.21
VPS4A-201ENST00000254950 ZNF804AQ7Z570 1209 aa13.73□□□□□ -0.21
VPS4A-201ENST00000254950 KBTBD3Q8NAB2 608 aa13.73□□□□□ -0.21
VPS4A-201ENST00000254950 TRIM44Q96DX7 344 aaPredicted RBP13.73□□□□□ -0.21
VPS4A-201ENST00000254950 CYP7A1P22680 504 aa13.72□□□□□ -0.21
VPS4A-201ENST00000254950 FOSBP53539 338 aa13.72□□□□□ -0.21
VPS4A-201ENST00000254950 SH2B1Q9NRF2 756 aaPredicted RBP13.72□□□□□ -0.21
VPS4A-201ENST00000254950 LIMCH1Q9UPQ0 1083 aa13.72□□□□□ -0.21
VPS4A-201ENST00000254950 TAF5LO75529 589 aa13.72□□□□□ -0.21
VPS4A-201ENST00000254950 EPHA10Q5JZY3 1008 aa13.72□□□□□ -0.21
VPS4A-201ENST00000254950 GPR108Q9NPR9 543 aa13.72□□□□□ -0.21
VPS4A-201ENST00000254950 CCDC69A6NI79 296 aa13.72□□□□□ -0.21
VPS4A-201ENST00000254950 NLGN1Q8N2Q7 840 aa13.72□□□□□ -0.21
VPS4A-201ENST00000254950 ZC3H12CQ9C0D7 883 aaKnown RBP13.72□□□□□ -0.21
VPS4A-201ENST00000254950 RNF41Q9H4P4 317 aaPredicted RBP13.72□□□□□ -0.21
VPS4A-201ENST00000254950 PXDNLA1KZ92 1463 aa13.71□□□□□ -0.21
VPS4A-201ENST00000254950 COL15A1P39059 1388 aa13.71□□□□□ -0.21
VPS4A-201ENST00000254950 PLCB2Q00722 1185 aa13.71□□□□□ -0.21
VPS4A-201ENST00000254950 CCDC34Q96HJ3 373 aa13.71□□□□□ -0.21
VPS4A-201ENST00000254950 MED1Q15648 1581 aaPredicted RBP13.71□□□□□ -0.21
VPS4A-201ENST00000254950 SGSM2O43147 1006 aa13.71□□□□□ -0.21
VPS4A-201ENST00000254950 BAG3O95817 575 aa13.71□□□□□ -0.21
VPS4A-201ENST00000254950 SUSD4Q5VX71 490 aa13.71□□□□□ -0.21
VPS4A-201ENST00000254950 NEK1Q96PY6 1258 aa13.71□□□□□ -0.21
VPS4A-201ENST00000254950 PUS3Q9BZE2 481 aaKnown RBP13.71□□□□□ -0.21
VPS4A-201ENST00000254950 NAA16Q6N069 864 aaPredicted RBP13.71□□□□□ -0.21
VPS4A-201ENST00000254950 SRP68Q9UHB9 627 aaKnown RBP13.71□□□□□ -0.21
VPS4A-201ENST00000254950 NARFQ9UHQ1 456 aa13.71□□□□□ -0.21
VPS4A-201ENST00000254950 WDR33Q9C0J8 1336 aaKnown RBP13.71□□□□□ -0.22
VPS4A-201ENST00000254950 EIF5P55010 431 aaKnown RBP13.71□□□□□ -0.22
VPS4A-201ENST00000254950 CCDC171Q6TFL3 1326 aa13.7□□□□□ -0.22
VPS4A-201ENST00000254950 RBM25P49756 843 aaKnown RBP13.7□□□□□ -0.22
VPS4A-201ENST00000254950 DENND2AQ9ULE3 1009 aa13.7□□□□□ -0.22
VPS4A-201ENST00000254950 XBP1P17861 261 aa13.7□□□□□ -0.22
VPS4A-201ENST00000254950 HAND2P61296 217 aa13.7□□□□□ -0.22
VPS4A-201ENST00000254950 TTLL11Q8NHH1 800 aa13.7□□□□□ -0.22
VPS4A-201ENST00000254950 HELLSQ9NRZ9 838 aa13.7□□□□□ -0.22
VPS4A-201ENST00000254950 PTMAP06454 111 aaKnown RBP13.7□□□□□ -0.22
VPS4A-201ENST00000254950 GSTO1P78417 241 aa13.7□□□□□ -0.22
VPS4A-201ENST00000254950 SASH1O94885 1247 aa13.69□□□□□ -0.22
VPS4A-201ENST00000254950 PDE8BO95263 885 aa13.69□□□□□ -0.22
VPS4A-201ENST00000254950 POLR3DP05423 398 aaPredicted RBP13.69□□□□□ -0.22
VPS4A-201ENST00000254950 HIBADHP31937 336 aaKnown RBP13.69□□□□□ -0.22
VPS4A-201ENST00000254950 ZNF287Q9HBT7 754 aa13.69□□□□□ -0.22
VPS4A-201ENST00000254950 TMOD2Q9NZR1 351 aa13.69□□□□□ -0.22
VPS4A-201ENST00000254950 DBNLQ9UJU6 430 aaKnown RBP13.69□□□□□ -0.22
VPS4A-201ENST00000254950 TNS2Q63HR2 1409 aa13.69□□□□□ -0.22
VPS4A-201ENST00000254950 PEAK1Q9H792 1746 aa13.69□□□□□ -0.22
VPS4A-201ENST00000254950 ADRA2BP18089 450 aa13.69□□□□□ -0.22
VPS4A-201ENST00000254950 LARP1BQ659C4 914 aaKnown RBP13.69□□□□□ -0.22
VPS4A-201ENST00000254950 CCDC83Q8IWF9 413 aa13.69□□□□□ -0.22
VPS4A-201ENST00000254950 MTMR7Q9Y216 660 aa13.69□□□□□ -0.22
VPS4A-201ENST00000254950 PDIA4P13667 645 aaKnown RBP13.69□□□□□ -0.22
VPS4A-201ENST00000254950 POLD1P28340 1107 aa13.69□□□□□ -0.22
VPS4A-201ENST00000254950 FNBP4Q8N3X1 1017 aaPredicted RBP13.69□□□□□ -0.22
VPS4A-201ENST00000254950 SNX21Q969T3 373 aa13.69□□□□□ -0.22
VPS4A-201ENST00000254950 CRNKL1Q9BZJ0 848 aaKnown RBP13.69□□□□□ -0.22
VPS4A-201ENST00000254950 CDHR2Q9BYE9 1310 aa13.68□□□□□ -0.22
VPS4A-201ENST00000254950 SLC27A3Q5K4L6 730 aa13.68□□□□□ -0.22
VPS4A-201ENST00000254950 TRIM22Q8IYM9 498 aa13.68□□□□□ -0.22
VPS4A-201ENST00000254950 CDKL5O76039 1030 aa13.68□□□□□ -0.22
VPS4A-201ENST00000254950 UFL1O94874 794 aa13.68□□□□□ -0.22
VPS4A-201ENST00000254950 ERFEQ4G0M1 354 aa13.68□□□□□ -0.22
VPS4A-201ENST00000254950 ZSCAN29Q8IWY8 852 aaPredicted RBP13.68□□□□□ -0.22
VPS4A-201ENST00000254950 EYA3Q99504 573 aa13.68□□□□□ -0.22
VPS4A-201ENST00000254950 NDUFB9Q9Y6M9 179 aa13.68□□□□□ -0.22
VPS4A-201ENST00000254950 MAGEB6Q8N7X4 407 aa13.68□□□□□ -0.22
VPS4A-201ENST00000254950 NUP133Q8WUM0 1156 aa13.68□□□□□ -0.22
VPS4A-201ENST00000254950 APPBP2Q92624 585 aa13.68□□□□□ -0.22
VPS4A-201ENST00000254950 FAM227BQ96M60 508 aa13.68□□□□□ -0.22
VPS4A-201ENST00000254950 ZAP70P43403 619 aa13.67□□□□□ -0.22
VPS4A-201ENST00000254950 RC3H1Q5TC82 1133 aaKnown RBP13.67□□□□□ -0.22
VPS4A-201ENST00000254950 NCOA7Q8NI08 942 aa13.67□□□□□ -0.22
VPS4A-201ENST00000254950 EDC3Q96F86 508 aaKnown RBP13.67□□□□□ -0.22
VPS4A-201ENST00000254950 GGA1Q9UJY5 639 aa13.67□□□□□ -0.22
VPS4A-201ENST00000254950 SSFA2P28290 1259 aa13.67□□□□□ -0.22
VPS4A-201ENST00000254950 CREB3L3Q68CJ9 461 aa13.67□□□□□ -0.22
VPS4A-201ENST00000254950 HAUS7Q99871 368 aa13.67□□□□□ -0.22
VPS4A-201ENST00000254950 SLC4A4Q9Y6R1 1079 aa13.67□□□□□ -0.22
VPS4A-201ENST00000254950 EPB41L2O43491 1005 aaKnown RBP13.67□□□□□ -0.22
VPS4A-201ENST00000254950 SERPINB2P05120 415 aa13.67□□□□□ -0.22
VPS4A-201ENST00000254950 ITPK1Q13572 414 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms