RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 RNF187Q5TA31 235 aaPredicted RBP21.4■■□□□ 1.02
SMARCC1-201ENST00000254480 MAGEB6Q8N7X4 407 aa21.4■■□□□ 1.02
SMARCC1-201ENST00000254480 PAG1Q9NWQ8 432 aa21.4■■□□□ 1.02
SMARCC1-201ENST00000254480 ESR2Q92731 530 aa21.4■■□□□ 1.02
SMARCC1-201ENST00000254480 THOC2Q8NI27 1593 aaKnown RBP21.4■■□□□ 1.02
SMARCC1-201ENST00000254480 NAPAP54920 295 aa21.4■■□□□ 1.02
SMARCC1-201ENST00000254480 TFCP2Q12800 502 aa21.4■■□□□ 1.02
SMARCC1-201ENST00000254480 CCDC91Q7Z6B0 441 aa21.4■■□□□ 1.02
SMARCC1-201ENST00000254480 ALS2CR12Q96Q35 445 aa21.4■■□□□ 1.02
SMARCC1-201ENST00000254480 APOBRQ0VD83 1088 aa21.4■■□□□ 1.02
SMARCC1-201ENST00000254480 KRT23Q9C075 422 aa21.4■■□□□ 1.02
SMARCC1-201ENST00000254480 CLEC11AQ9Y240 323 aa21.4■■□□□ 1.02
SMARCC1-201ENST00000254480 RBM25P49756 843 aaKnown RBP21.39■■□□□ 1.02
SMARCC1-201ENST00000254480 UBASH3AP57075 661 aa21.39■■□□□ 1.02
SMARCC1-201ENST00000254480 GSTO1P78417 241 aa21.39■■□□□ 1.02
SMARCC1-201ENST00000254480 MAP9Q49MG5 647 aa21.39■■□□□ 1.02
SMARCC1-201ENST00000254480 DHX58Q96C10 678 aa21.39■■□□□ 1.02
SMARCC1-201ENST00000254480 SHTN1A0MZ66 631 aa21.39■■□□□ 1.02
SMARCC1-201ENST00000254480 UTP14AQ9BVJ6 771 aaKnown RBP21.39■■□□□ 1.01
SMARCC1-201ENST00000254480 POLKQ9UBT6 870 aa21.39■■□□□ 1.01
SMARCC1-201ENST00000254480 ZBTB21Q9ULJ3 1066 aa21.39■■□□□ 1.01
SMARCC1-201ENST00000254480 COMMD10Q9Y6G5 202 aa21.39■■□□□ 1.01
SMARCC1-201ENST00000254480 AKAP4Q5JQC9 854 aa21.39■■□□□ 1.01
SMARCC1-201ENST00000254480 FAM107BQ9H098 131 aa21.39■■□□□ 1.01
SMARCC1-201ENST00000254480 ATP8B2P98198 1209 aa21.39■■□□□ 1.01
SMARCC1-201ENST00000254480 DPH6Q7L8W6 267 aa21.39■■□□□ 1.01
SMARCC1-201ENST00000254480 MAATS1Q7Z4T9 603 aa21.39■■□□□ 1.01
SMARCC1-201ENST00000254480 DTNBO60941 627 aa21.38■■□□□ 1.01
SMARCC1-201ENST00000254480 MAGEB6P1A0A0J9YX57 407 aa21.38■■□□□ 1.01
SMARCC1-201ENST00000254480 RLBP1P12271 317 aa21.38■■□□□ 1.01
SMARCC1-201ENST00000254480 KDM5BQ9UGL1 1544 aa21.38■■□□□ 1.01
SMARCC1-201ENST00000254480 ANKRD44Q8N8A2 993 aa21.38■■□□□ 1.01
SMARCC1-201ENST00000254480 PHACTR3Q96KR7 559 aa21.38■■□□□ 1.01
SMARCC1-201ENST00000254480 DNAJC25Q9H1X3 360 aa21.38■■□□□ 1.01
SMARCC1-201ENST00000254480 GJC1P36383 396 aa21.38■■□□□ 1.01
SMARCC1-201ENST00000254480 SP4Q02446 784 aa21.38■■□□□ 1.01
SMARCC1-201ENST00000254480 AKR1B10O60218 316 aa21.37■■□□□ 1.01
SMARCC1-201ENST00000254480 CCDC174Q6PII3 467 aa21.37■■□□□ 1.01
SMARCC1-201ENST00000254480 VTI1AQ96AJ9 217 aa21.37■■□□□ 1.01
SMARCC1-201ENST00000254480 DACT1Q9NYF0 836 aa21.37■■□□□ 1.01
SMARCC1-201ENST00000254480 AOPEPQ8N6M6 819 aa21.37■■□□□ 1.01
SMARCC1-201ENST00000254480 DNAI2Q9GZS0 605 aa21.37■■□□□ 1.01
SMARCC1-201ENST00000254480 MCM9Q9NXL9 1143 aa21.37■■□□□ 1.01
SMARCC1-201ENST00000254480 IL16Q14005 1332 aa21.37■■□□□ 1.01
SMARCC1-201ENST00000254480 NBPF7P0C2Y1 421 aaPredicted RBP21.37■■□□□ 1.01
SMARCC1-201ENST00000254480 CPA1P15085 419 aa21.37■■□□□ 1.01
SMARCC1-201ENST00000254480 HDAC1Q13547 482 aaPredicted RBP21.36■■□□□ 1.01
SMARCC1-201ENST00000254480 IRS4O14654 1257 aaPredicted RBP21.36■■□□□ 1.01
SMARCC1-201ENST00000254480 FAM212AQ96EL1 285 aa21.36■■□□□ 1.01
SMARCC1-201ENST00000254480 STX17P56962 302 aa21.36■■□□□ 1.01
SMARCC1-201ENST00000254480 GSDMDP57764 484 aa21.36■■□□□ 1.01
SMARCC1-201ENST00000254480 ASIC1P78348 528 aa21.36■■□□□ 1.01
SMARCC1-201ENST00000254480 TFCP2L1Q9NZI6 479 aa21.36■■□□□ 1.01
SMARCC1-201ENST00000254480 CEP135Q66GS9 1140 aa21.35■■□□□ 1.01
SMARCC1-201ENST00000254480 ZSCAN16Q9H4T2 348 aaPredicted RBP21.35■■□□□ 1.01
SMARCC1-201ENST00000254480 FAM114A1Q8IWE2 563 aa21.35■■□□□ 1.01
SMARCC1-201ENST00000254480 OGFOD1Q8N543 542 aa21.35■■□□□ 1.01
SMARCC1-201ENST00000254480 IL15P40933 162 aaPredicted RBP21.35■■□□□ 1.01
SMARCC1-201ENST00000254480 SMARCC2Q8TAQ2 1214 aa21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 SERPINA10Q9UK55 444 aa21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 HMGB2P26583 209 aaKnown RBP21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 STXBP4Q6ZWJ1 553 aa21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 BICC1Q9H694 974 aaKnown RBP21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 SYNCQ9H7C4 482 aa21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 SPAG5Q96R06 1193 aa21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 SAP30BPQ9UHR5 308 aaKnown RBP21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 TMEM110-MUSTN1A8MSY1 372 aa21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 MCM7P33993 719 aa21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 TNNI2P48788 182 aa21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 KANK3Q6NY19 840 aa21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 CTR9Q6PD62 1173 aa21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 CUL7Q14999 1698 aa21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 GTF2F1P35269 517 aaKnown RBP eCLIP21.34■■□□□ 1.011e-6■■■■□ 22.4
SMARCC1-201ENST00000254480 NPHP3Q7Z494 1330 aa21.34■■□□□ 1.01
SMARCC1-201ENST00000254480 IL2RBP14784 551 aa21.33■■□□□ 1.01
SMARCC1-201ENST00000254480 MRVI1Q9Y6F6 885 aa21.33■■□□□ 1.01
SMARCC1-201ENST00000254480 PKD2L1Q9P0L9 805 aa21.33■■□□□ 1.01
SMARCC1-201ENST00000254480 PHACTR2O75167 634 aa21.33■■□□□ 1.01
SMARCC1-201ENST00000254480 ZFYP08048 801 aaPredicted RBP21.33■■□□□ 1.01
SMARCC1-201ENST00000254480 LMOD1P29536 600 aaPredicted RBP21.33■■□□□ 1
SMARCC1-201ENST00000254480 ZGPATQ8N5A5 531 aaKnown RBP21.33■■□□□ 1
SMARCC1-201ENST00000254480 AK2P54819 239 aa21.33■■□□□ 1
SMARCC1-201ENST00000254480 ZNF354CQ86Y25 554 aa21.33■■□□□ 1
SMARCC1-201ENST00000254480 CCDC24Q8N4L8 307 aa21.33■■□□□ 1
SMARCC1-201ENST00000254480 PPP4R3BQ5MIZ7 849 aa21.32■■□□□ 1
SMARCC1-201ENST00000254480 ATP2C2O75185 946 aa21.32■■□□□ 1
SMARCC1-201ENST00000254480 EYA1Q99502 592 aa21.32■■□□□ 1
SMARCC1-201ENST00000254480 ZNF804AQ7Z570 1209 aa21.32■■□□□ 1
SMARCC1-201ENST00000254480 GCOM1H8Y6P7 765 aaPredicted RBP21.32■■□□□ 1
SMARCC1-201ENST00000254480 MYZAPP0CAP1 466 aa21.32■■□□□ 1
SMARCC1-201ENST00000254480 KLHL40Q2TBA0 621 aa21.32■■□□□ 1
SMARCC1-201ENST00000254480 CCDC129Q6ZRS4 1044 aa21.32■■□□□ 1
SMARCC1-201ENST00000254480 TTC21AQ8NDW8 1320 aa21.32■■□□□ 1
SMARCC1-201ENST00000254480 CEP85Q6P2H3 762 aa21.32■■□□□ 1
SMARCC1-201ENST00000254480 CCDC186Q7Z3E2 898 aa21.32■■□□□ 1
SMARCC1-201ENST00000254480 KLHDC4Q8TBB5 520 aa21.32■■□□□ 1
SMARCC1-201ENST00000254480 MRPS27Q92552 414 aaKnown RBP21.32■■□□□ 1
SMARCC1-201ENST00000254480 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.32■■□□□ 12e-6■□□□□ 8.6
SMARCC1-201ENST00000254480 V9GYY5 206 aaPredicted RBP21.32■■□□□ 1
SMARCC1-201ENST00000254480 CNNM2Q9H8M5 875 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms