RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 PALLDQ8WX93 1383 aa19.42■□□□□ 0.7
HOXD3-201ENST00000249440 NBPF26B4DH59 902 aa19.42■□□□□ 0.7
HOXD3-201ENST00000249440 NBPF14Q5TI25 921 aa19.42■□□□□ 0.7
HOXD3-201ENST00000249440 NBPF10Q6P3W6 841 aaKnown RBP19.42■□□□□ 0.7
HOXD3-201ENST00000249440 NBPF15Q8N660 670 aa19.42■□□□□ 0.7
HOXD3-201ENST00000249440 HELLSQ9NRZ9 838 aa19.42■□□□□ 0.7
HOXD3-201ENST00000249440 ABCA3Q99758 1704 aa19.42■□□□□ 0.7
HOXD3-201ENST00000249440 CHGBP05060 677 aa19.41■□□□□ 0.7
HOXD3-201ENST00000249440 IL15P40933 162 aaPredicted RBP19.41■□□□□ 0.7
HOXD3-201ENST00000249440 PLCB2Q00722 1185 aa19.41■□□□□ 0.7
HOXD3-201ENST00000249440 PAG1Q9NWQ8 432 aa19.41■□□□□ 0.7
HOXD3-201ENST00000249440 LIG1P18858 919 aa19.41■□□□□ 0.7
HOXD3-201ENST00000249440 FGD1P98174 961 aa19.41■□□□□ 0.7
HOXD3-201ENST00000249440 ATG9AQ7Z3C6 839 aa19.41■□□□□ 0.7
HOXD3-201ENST00000249440 LEO1Q8WVC0 666 aaPredicted RBP19.41■□□□□ 0.7
HOXD3-201ENST00000249440 PIBF1Q8WXW3 757 aa19.41■□□□□ 0.7
HOXD3-201ENST00000249440 TFIP11Q9UBB9 837 aaKnown RBP19.41■□□□□ 0.7
HOXD3-201ENST00000249440 PCDH11XQ9BZA7 1347 aa19.4■□□□□ 0.7
HOXD3-201ENST00000249440 PCDH11YQ9BZA8 1340 aa19.4■□□□□ 0.7
HOXD3-201ENST00000249440 PHLPP1O60346 1717 aa19.4■□□□□ 0.7
HOXD3-201ENST00000249440 TOM1O60784 492 aa19.4■□□□□ 0.7
HOXD3-201ENST00000249440 H3BQV1 296 aa19.4■□□□□ 0.7
HOXD3-201ENST00000249440 JAK2O60674 1132 aa19.4■□□□□ 0.7
HOXD3-201ENST00000249440 IFFO2Q5TF58 517 aa19.4■□□□□ 0.7
HOXD3-201ENST00000249440 SASS6Q6UVJ0 657 aa19.4■□□□□ 0.7
HOXD3-201ENST00000249440 FAM200AQ8TCP9 573 aa19.4■□□□□ 0.7
HOXD3-201ENST00000249440 ZNF830Q96NB3 372 aaPredicted RBP19.4■□□□□ 0.7
HOXD3-201ENST00000249440 TNMDQ9H2S6 317 aa19.4■□□□□ 0.7
HOXD3-201ENST00000249440 ZSCAN16Q9H4T2 348 aaPredicted RBP19.4■□□□□ 0.7
HOXD3-201ENST00000249440 DDX19AQ9NUU7 478 aaKnown RBP19.4■□□□□ 0.7
HOXD3-201ENST00000249440 DACT1Q9NYF0 836 aa19.4■□□□□ 0.7
HOXD3-201ENST00000249440 COL16A1Q07092 1604 aaPredicted RBP19.39■□□□□ 0.69
HOXD3-201ENST00000249440 UQCRHLA0A096LP55 91 aa19.39■□□□□ 0.69
HOXD3-201ENST00000249440 ERVV-2B6SEH9 535 aa19.39■□□□□ 0.69
HOXD3-201ENST00000249440 GOLIM4O00461 696 aa19.39■□□□□ 0.69
HOXD3-201ENST00000249440 UQCRHP07919 91 aa19.39■□□□□ 0.69
HOXD3-201ENST00000249440 NUP188Q5SRE5 1749 aa19.39■□□□□ 0.69
HOXD3-201ENST00000249440 DHX32Q7L7V1 743 aaKnown RBP19.39■□□□□ 0.69
HOXD3-201ENST00000249440 MPNDQ8N594 471 aa19.39■□□□□ 0.69
HOXD3-201ENST00000249440 CCDC191Q8NCU4 936 aa19.39■□□□□ 0.69
HOXD3-201ENST00000249440 UBE2Q2Q8WVN8 375 aa19.39■□□□□ 0.69
HOXD3-201ENST00000249440 BRF1Q92994 677 aa19.39■□□□□ 0.69
HOXD3-201ENST00000249440 LLPHQ9BRT6 129 aaKnown RBP19.39■□□□□ 0.69
HOXD3-201ENST00000249440 DSCC1Q9BVC3 393 aa19.39■□□□□ 0.69
HOXD3-201ENST00000249440 CCDC9Q9Y3X0 531 aaKnown RBP19.39■□□□□ 0.69
HOXD3-201ENST00000249440 LAMA4Q16363 1823 aa19.39■□□□□ 0.69
HOXD3-201ENST00000249440 AHDC1Q5TGY3 1603 aaPredicted RBP19.39■□□□□ 0.69
HOXD3-201ENST00000249440 TIMM10P62072 90 aa19.39■□□□□ 0.69
HOXD3-201ENST00000249440 CAMK4Q16566 473 aa19.39■□□□□ 0.69
HOXD3-201ENST00000249440 TTLL7Q6ZT98 887 aa19.39■□□□□ 0.69
HOXD3-201ENST00000249440 ZCRB1Q8TBF4 217 aaKnown RBP19.39■□□□□ 0.69
HOXD3-201ENST00000249440 TTC12Q9H892 705 aaPredicted RBP19.39■□□□□ 0.69
HOXD3-201ENST00000249440 UBR2Q8IWV8 1755 aa19.38■□□□□ 0.69
HOXD3-201ENST00000249440 TPM3P06753 285 aa19.38■□□□□ 0.69
HOXD3-201ENST00000249440 ATG3Q9NT62 314 aa19.38■□□□□ 0.69
HOXD3-201ENST00000249440 CFAP45Q9UL16 551 aa19.38■□□□□ 0.69
HOXD3-201ENST00000249440 TYRO3Q06418 890 aa19.37■□□□□ 0.69
HOXD3-201ENST00000249440 SCRN1Q12765 414 aa19.37■□□□□ 0.69
HOXD3-201ENST00000249440 NOLC1Q14978 699 aaKnown RBP eCLIP19.37■□□□□ 0.69
HOXD3-201ENST00000249440 DNTTIP2Q5QJE6 756 aaKnown RBP19.37■□□□□ 0.69
HOXD3-201ENST00000249440 EYA2O00167 538 aa19.37■□□□□ 0.69
HOXD3-201ENST00000249440 PFKFB2O60825 505 aa19.37■□□□□ 0.69
HOXD3-201ENST00000249440 RESTQ13127 1097 aa19.37■□□□□ 0.69
HOXD3-201ENST00000249440 SMARCC2Q8TAQ2 1214 aa19.37■□□□□ 0.69
HOXD3-201ENST00000249440 PDCL3Q9H2J4 239 aa19.37■□□□□ 0.69
HOXD3-201ENST00000249440 GOLGA6L6A8MZA4 724 aa19.36■□□□□ 0.69
HOXD3-201ENST00000249440 GLIPR1L2Q4G1C9 344 aa19.36■□□□□ 0.69
HOXD3-201ENST00000249440 ZMYM1Q5SVZ6 1142 aa19.36■□□□□ 0.69
HOXD3-201ENST00000249440 STOX1Q6ZVD7 989 aa19.36■□□□□ 0.69
HOXD3-201ENST00000249440 MRVI1Q9Y6F6 885 aa19.36■□□□□ 0.69
HOXD3-201ENST00000249440 TJP1Q07157 1748 aa19.36■□□□□ 0.69
HOXD3-201ENST00000249440 WDR17Q8IZU2 1322 aa19.36■□□□□ 0.69
HOXD3-201ENST00000249440 CIAO1O76071 339 aa19.36■□□□□ 0.69
HOXD3-201ENST00000249440 A1BGP04217 495 aa19.36■□□□□ 0.69
HOXD3-201ENST00000249440 RBM43Q6ZSC3 357 aaKnown RBP19.36■□□□□ 0.69
HOXD3-201ENST00000249440 DDX11Q96FC9 970 aa19.36■□□□□ 0.69
HOXD3-201ENST00000249440 LRRC2Q9BYS8 371 aa19.36■□□□□ 0.69
HOXD3-201ENST00000249440 KIF3AQ9Y496 699 aa19.36■□□□□ 0.69
HOXD3-201ENST00000249440 AP5Z1O43299 807 aa19.35■□□□□ 0.69
HOXD3-201ENST00000249440 IFIT1P09914 478 aaKnown RBP19.35■□□□□ 0.69
HOXD3-201ENST00000249440 TOM1L2Q6ZVM7 507 aa19.35■□□□□ 0.69
HOXD3-201ENST00000249440 BICD2Q8TD16 824 aa19.35■□□□□ 0.69
HOXD3-201ENST00000249440 CLSTN2Q9H4D0 955 aa19.35■□□□□ 0.69
HOXD3-201ENST00000249440 SPEF2Q9C093 1822 aa19.35■□□□□ 0.69
HOXD3-201ENST00000249440 DYNC1I1O14576 645 aa19.35■□□□□ 0.69
HOXD3-201ENST00000249440 HMGN5P82970 282 aaKnown RBP19.35■□□□□ 0.69
HOXD3-201ENST00000249440 CKAP2LQ8IYA6 745 aa19.35■□□□□ 0.69
HOXD3-201ENST00000249440 ZBTB3Q9H5J0 574 aa19.35■□□□□ 0.69
HOXD3-201ENST00000249440 A0A1B0GUL7 405 aa19.34■□□□□ 0.69
HOXD3-201ENST00000249440 HSPD1P10809 573 aaKnown RBP19.34■□□□□ 0.69
HOXD3-201ENST00000249440 LRRC24Q50LG9 513 aa19.34■□□□□ 0.69
HOXD3-201ENST00000249440 PGBD1Q96JS3 809 aa19.34■□□□□ 0.69
HOXD3-201ENST00000249440 AGXT2Q9BYV1 514 aa19.34■□□□□ 0.69
HOXD3-201ENST00000249440 RNF113AO15541 343 aaKnown RBP19.34■□□□□ 0.69
HOXD3-201ENST00000249440 EXOSC10Q01780 885 aaKnown RBP19.34■□□□□ 0.69
HOXD3-201ENST00000249440 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.34■□□□□ 0.69
HOXD3-201ENST00000249440 NKX1-1Q15270 411 aaPredicted RBP19.33■□□□□ 0.69
HOXD3-201ENST00000249440 NAA16Q6N069 864 aaPredicted RBP19.33■□□□□ 0.69
HOXD3-201ENST00000249440 NSUN7Q8NE18 718 aaKnown RBP19.33■□□□□ 0.69
HOXD3-201ENST00000249440 CHMP4CQ96CF2 233 aa19.33■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms