RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 CHGBP05060 677 aa15.82■□□□□ 0.12
HIF3A-201ENST00000244302 MMP10P09238 476 aa15.82■□□□□ 0.12
HIF3A-201ENST00000244302 ECHDC1Q9NTX5 307 aa15.82■□□□□ 0.12
HIF3A-201ENST00000244302 RIC1Q4ADV7 1423 aa15.81■□□□□ 0.12
HIF3A-201ENST00000244302 VGLL2Q8N8G2 317 aa15.81■□□□□ 0.12
HIF3A-201ENST00000244302 MPHOSPH8Q99549 860 aa15.8■□□□□ 0.12
HIF3A-201ENST00000244302 IL25Q9H293 177 aa15.8■□□□□ 0.12
HIF3A-201ENST00000244302 STK32BQ9NY57 414 aa15.8■□□□□ 0.12
HIF3A-201ENST00000244302 MFAP1P55081 439 aaKnown RBP15.8■□□□□ 0.12
HIF3A-201ENST00000244302 TNRC6CQ9HCJ0 1690 aaKnown RBP15.79■□□□□ 0.12
HIF3A-201ENST00000244302 COL24A1Q17RW2 1714 aa15.79■□□□□ 0.12
HIF3A-201ENST00000244302 NLGN1Q8N2Q7 840 aa15.79■□□□□ 0.12
HIF3A-201ENST00000244302 XAGE2Q96GT9 111 aa15.79■□□□□ 0.12
HIF3A-201ENST00000244302 PDE8BO95263 885 aa15.78■□□□□ 0.12
HIF3A-201ENST00000244302 SCARF1Q14162 830 aa15.78■□□□□ 0.12
HIF3A-201ENST00000244302 SLFNL1Q499Z3 407 aa15.78■□□□□ 0.12
HIF3A-201ENST00000244302 PI16Q6UXB8 463 aa15.78■□□□□ 0.12
HIF3A-201ENST00000244302 IGHMBP2P38935 993 aaKnown RBP15.77■□□□□ 0.12
HIF3A-201ENST00000244302 CHRNDQ07001 517 aa15.77■□□□□ 0.12
HIF3A-201ENST00000244302 SNRKQ9NRH2 765 aa15.77■□□□□ 0.12
HIF3A-201ENST00000244302 ANKRD18AQ8IVF6 992 aa15.77■□□□□ 0.11
HIF3A-201ENST00000244302 TTC41PQ6P2S7 1318 aa15.77■□□□□ 0.11
HIF3A-201ENST00000244302 CDC45O75419 566 aa15.76■□□□□ 0.11
HIF3A-201ENST00000244302 GLRX3O76003 335 aaKnown RBP15.76■□□□□ 0.11
HIF3A-201ENST00000244302 RPS8P62241 208 aaKnown RBP15.76■□□□□ 0.11
HIF3A-201ENST00000244302 ATP2B3Q16720 1220 aa15.76■□□□□ 0.11
HIF3A-201ENST00000244302 MINPP1Q9UNW1 487 aa15.76■□□□□ 0.11
HIF3A-201ENST00000244302 LAMB2P55268 1798 aa15.76■□□□□ 0.11
HIF3A-201ENST00000244302 ZNF609O15014 1411 aa15.76■□□□□ 0.11
HIF3A-201ENST00000244302 FLAD1Q8NFF5 587 aa15.76■□□□□ 0.11
HIF3A-201ENST00000244302 DNAJC2Q99543 621 aaKnown RBP15.76■□□□□ 0.11
HIF3A-201ENST00000244302 ANTXR1Q9H6X2 564 aa15.76■□□□□ 0.11
HIF3A-201ENST00000244302 RTL9Q8NET4 1388 aa15.75■□□□□ 0.11
HIF3A-201ENST00000244302 KLRK1P26718 216 aa15.75■□□□□ 0.11
HIF3A-201ENST00000244302 OLFM4Q6UX06 510 aa15.75■□□□□ 0.11
HIF3A-201ENST00000244302 UPF1Q92900 1129 aaKnown RBP eCLIP15.75■□□□□ 0.11
HIF3A-201ENST00000244302 GPR108Q9NPR9 543 aa15.75■□□□□ 0.11
HIF3A-201ENST00000244302 FBXO3Q9UK99 471 aa15.75■□□□□ 0.11
HIF3A-201ENST00000244302 SPEF2Q9C093 1822 aa15.75■□□□□ 0.11
HIF3A-201ENST00000244302 FGFR2P21802 821 aa15.74■□□□□ 0.11
HIF3A-201ENST00000244302 CHMLP26374 656 aa15.74■□□□□ 0.11
HIF3A-201ENST00000244302 ST5P78524 1137 aa15.74■□□□□ 0.11
HIF3A-201ENST00000244302 DDX46Q7L014 1031 aaKnown RBP15.74■□□□□ 0.11
HIF3A-201ENST00000244302 CDC5LQ99459 802 aaKnown RBP15.74■□□□□ 0.11
HIF3A-201ENST00000244302 CASZ1Q86V15 1759 aa15.74■□□□□ 0.11
HIF3A-201ENST00000244302 AOX1Q06278 1338 aa15.74■□□□□ 0.11
HIF3A-201ENST00000244302 HSP90B1P14625 803 aaKnown RBP15.74■□□□□ 0.11
HIF3A-201ENST00000244302 ATP5JP18859 108 aa15.74■□□□□ 0.11
HIF3A-201ENST00000244302 PHKA1P46020 1223 aa15.74■□□□□ 0.11
HIF3A-201ENST00000244302 GPR101Q96P66 508 aaPredicted RBP15.74■□□□□ 0.11
HIF3A-201ENST00000244302 BSDC1Q9NW68 430 aaPredicted RBP15.74■□□□□ 0.11
HIF3A-201ENST00000244302 ERC2O15083 957 aa15.73■□□□□ 0.11
HIF3A-201ENST00000244302 BCAMP50895 628 aa15.73■□□□□ 0.11
HIF3A-201ENST00000244302 IQSEC3Q9UPP2 1182 aaPredicted RBP15.73■□□□□ 0.11
HIF3A-201ENST00000244302 PARP3Q9Y6F1 533 aa15.73■□□□□ 0.11
HIF3A-201ENST00000244302 MROH5Q6ZUA9 1318 aa15.73■□□□□ 0.11
HIF3A-201ENST00000244302 RGPD3A6NKT7 1758 aaPredicted RBP15.73■□□□□ 0.11
HIF3A-201ENST00000244302 RGPD4Q7Z3J3 1758 aa15.73■□□□□ 0.11
HIF3A-201ENST00000244302 ZBTB7AO95365 584 aa15.73■□□□□ 0.11
HIF3A-201ENST00000244302 CRY2Q49AN0 593 aa15.73■□□□□ 0.11
HIF3A-201ENST00000244302 GORABQ5T7V8 394 aa15.73■□□□□ 0.11
HIF3A-201ENST00000244302 GPATCH3Q96I76 525 aa15.73■□□□□ 0.11
HIF3A-201ENST00000244302 FKBP4Q02790 459 aaKnown RBP eCLIP15.72■□□□□ 0.11
HIF3A-201ENST00000244302 AKAP2Q9Y2D5 859 aa15.72■□□□□ 0.11
HIF3A-201ENST00000244302 GOLIM4O00461 696 aa15.71■□□□□ 0.11
HIF3A-201ENST00000244302 CWC27Q6UX04 472 aaKnown RBP15.71■□□□□ 0.11
HIF3A-201ENST00000244302 TXNRD3Q86VQ6 643 aa15.71■□□□□ 0.11
HIF3A-201ENST00000244302 FAM227BQ96M60 508 aa15.71■□□□□ 0.11
HIF3A-201ENST00000244302 IFIT1P09914 478 aaKnown RBP15.71■□□□□ 0.11
HIF3A-201ENST00000244302 MCAMP43121 646 aa15.71■□□□□ 0.11
HIF3A-201ENST00000244302 GYG1P46976 350 aa15.71■□□□□ 0.11
HIF3A-201ENST00000244302 GRAPQ13588 217 aa15.71■□□□□ 0.11
HIF3A-201ENST00000244302 PUM3Q15397 648 aaKnown RBP15.71■□□□□ 0.11
HIF3A-201ENST00000244302 CCDC102BQ68D86 513 aa15.71■□□□□ 0.11
HIF3A-201ENST00000244302 GRAPLQ8TC17 118 aaPredicted RBP15.71■□□□□ 0.11
HIF3A-201ENST00000244302 RPGRQ92834 1020 aaKnown RBP15.71■□□□□ 0.11
HIF3A-201ENST00000244302 HAUS7Q99871 368 aa15.71■□□□□ 0.11
HIF3A-201ENST00000244302 LRP5O75197 1615 aa15.7■□□□□ 0.1
HIF3A-201ENST00000244302 PSDA5PKW4 1024 aaPredicted RBP15.7■□□□□ 0.1
HIF3A-201ENST00000244302 CHRNA5P30532 468 aa15.7■□□□□ 0.1
HIF3A-201ENST00000244302 ZAP70P43403 619 aa15.7■□□□□ 0.1
HIF3A-201ENST00000244302 R3HDM1Q15032 1099 aaKnown RBP15.7■□□□□ 0.1
HIF3A-201ENST00000244302 TTC39AQ5SRH9 613 aa15.7■□□□□ 0.1
HIF3A-201ENST00000244302 CNTROBQ8N137 903 aa15.7■□□□□ 0.1
HIF3A-201ENST00000244302 LPIN2Q92539 896 aa15.7■□□□□ 0.1
HIF3A-201ENST00000244302 ATF5Q9Y2D1 282 aaPredicted RBP15.7■□□□□ 0.1
HIF3A-201ENST00000244302 BRIP1Q9BX63 1249 aa15.7■□□□□ 0.1
HIF3A-201ENST00000244302 KLRG2A4D1S0 409 aaPredicted RBP15.69■□□□□ 0.1
HIF3A-201ENST00000244302 HMGB2P26583 209 aaKnown RBP15.69■□□□□ 0.1
HIF3A-201ENST00000244302 CCDC125Q86Z20 511 aa15.69■□□□□ 0.1
HIF3A-201ENST00000244302 EVI5LQ96CN4 794 aa15.69■□□□□ 0.1
HIF3A-201ENST00000244302 SEC62Q99442 399 aaKnown RBP15.69■□□□□ 0.1
HIF3A-201ENST00000244302 ESYT1Q9BSJ8 1104 aa15.69■□□□□ 0.1
HIF3A-201ENST00000244302 WWC3Q9ULE0 1092 aa15.69■□□□□ 0.1
HIF3A-201ENST00000244302 SRGNP10124 158 aa15.68■□□□□ 0.1
HIF3A-201ENST00000244302 CCDC158Q5M9N0 1113 aa15.68■□□□□ 0.1
HIF3A-201ENST00000244302 FSD1Q9BTV5 496 aa15.68■□□□□ 0.1
HIF3A-201ENST00000244302 C22orf23Q9BZE7 217 aa15.68■□□□□ 0.1
HIF3A-201ENST00000244302 ANKRD31Q8N7Z5 1873 aa15.68■□□□□ 0.1
HIF3A-201ENST00000244302 ILDR2Q71H61 639 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms