RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 DZIP3Q86Y13 1208 aaKnown RBP9.84□□□□□ -0.83
VAMP3-201ENST00000054666 GPT2Q8TD30 523 aa9.84□□□□□ -0.83
VAMP3-201ENST00000054666 CCDC85AQ96PX6 553 aaPredicted RBP9.84□□□□□ -0.83
VAMP3-201ENST00000054666 PUS3Q9BZE2 481 aaKnown RBP9.84□□□□□ -0.83
VAMP3-201ENST00000054666 ABCC12Q96J65 1359 aa9.84□□□□□ -0.83
VAMP3-201ENST00000054666 ANKRD18BA2A2Z9 1011 aa9.84□□□□□ -0.83
VAMP3-201ENST00000054666 ERVV-1B6SEH8 477 aa9.84□□□□□ -0.83
VAMP3-201ENST00000054666 CSF1RP07333 972 aa9.84□□□□□ -0.83
VAMP3-201ENST00000054666 PRIM1P49642 420 aaKnown RBP9.84□□□□□ -0.83
VAMP3-201ENST00000054666 CTSWP56202 376 aa9.84□□□□□ -0.83
VAMP3-201ENST00000054666 ME3Q16798 604 aa9.84□□□□□ -0.83
VAMP3-201ENST00000054666 NEK1Q96PY6 1258 aa9.84□□□□□ -0.83
VAMP3-201ENST00000054666 ALDH8A1Q9H2A2 487 aaPredicted RBP9.84□□□□□ -0.83
VAMP3-201ENST00000054666 RTN4Q9NQC3 1192 aaKnown RBP9.84□□□□□ -0.83
VAMP3-201ENST00000054666 TRMT112Q9UI30 125 aaKnown RBP9.84□□□□□ -0.83
VAMP3-201ENST00000054666 SPATA31A1Q5TZJ5 1347 aa9.84□□□□□ -0.83
VAMP3-201ENST00000054666 F13A1P00488 732 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 PDCP20941 246 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 HLFQ16534 295 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 FOXD4L6Q3SYB3 417 aaPredicted RBP9.83□□□□□ -0.84
VAMP3-201ENST00000054666 METTL24Q5JXM2 366 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 FOXD4L3Q6VB84 417 aaPredicted RBP9.83□□□□□ -0.84
VAMP3-201ENST00000054666 GAS2L3Q86XJ1 694 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 XAGE2Q96GT9 111 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 CHAMP1Q96JM3 812 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 SEC62Q99442 399 aaKnown RBP9.83□□□□□ -0.84
VAMP3-201ENST00000054666 DSCC1Q9BVC3 393 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 TPCN1Q9ULQ1 816 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 RIC1Q4ADV7 1423 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 LTBP4Q8N2S1 1624 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 NUP98P52948 1817 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 IRS4O14654 1257 aaPredicted RBP9.83□□□□□ -0.84
VAMP3-201ENST00000054666 RNF113AO15541 343 aaKnown RBP9.83□□□□□ -0.84
VAMP3-201ENST00000054666 PHF14O94880 888 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 ZFYP08048 801 aaPredicted RBP9.83□□□□□ -0.84
VAMP3-201ENST00000054666 HMGB1P09429 215 aaKnown RBP9.83□□□□□ -0.84
VAMP3-201ENST00000054666 ITGA6P23229 1130 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 NASPP49321 788 aaPredicted RBP9.83□□□□□ -0.84
VAMP3-201ENST00000054666 FGD1P98174 961 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 FKBP4Q02790 459 aaKnown RBP eCLIP9.83□□□□□ -0.84
VAMP3-201ENST00000054666 ZMYM1Q5SVZ6 1142 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 SLC4A9Q96Q91 983 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 CNNM1Q9NRU3 951 aa9.83□□□□□ -0.84
VAMP3-201ENST00000054666 NWD2Q9ULI1 1742 aa9.82□□□□□ -0.84
VAMP3-201ENST00000054666 VPS37CA5D8V6 355 aaPredicted RBP9.82□□□□□ -0.84
VAMP3-201ENST00000054666 PDE8AO60658 829 aa9.82□□□□□ -0.84
VAMP3-201ENST00000054666 HSP90B1P14625 803 aaKnown RBP9.82□□□□□ -0.84
VAMP3-201ENST00000054666 ATP2B3Q16720 1220 aa9.82□□□□□ -0.84
VAMP3-201ENST00000054666 LDHAL6AQ6ZMR3 332 aa9.82□□□□□ -0.84
VAMP3-201ENST00000054666 FAM43AQ8N2R8 423 aa9.82□□□□□ -0.84
VAMP3-201ENST00000054666 NECAB1Q8N987 351 aa9.82□□□□□ -0.84
VAMP3-201ENST00000054666 TMEM87AQ8NBN3 555 aa9.82□□□□□ -0.84
VAMP3-201ENST00000054666 TCEANC2Q96MN5 208 aa9.82□□□□□ -0.84
VAMP3-201ENST00000054666 CYP21A2P08686 494 aa9.82□□□□□ -0.84
VAMP3-201ENST00000054666 TTLL11Q8NHH1 800 aa9.82□□□□□ -0.84
VAMP3-201ENST00000054666 TRIM44Q96DX7 344 aaPredicted RBP9.82□□□□□ -0.84
VAMP3-201ENST00000054666 GREM2Q9H772 168 aa9.82□□□□□ -0.84
VAMP3-201ENST00000054666 RBM27Q9P2N5 1060 aaKnown RBP9.82□□□□□ -0.84
VAMP3-201ENST00000054666 MAST3O60307 1309 aa9.82□□□□□ -0.84
VAMP3-201ENST00000054666 ADORA1P30542 326 aa9.81□□□□□ -0.84
VAMP3-201ENST00000054666 TOB2Q14106 344 aaPredicted RBP9.81□□□□□ -0.84
VAMP3-201ENST00000054666 GDPD2Q9HCC8 539 aa9.81□□□□□ -0.84
VAMP3-201ENST00000054666 CCDC87Q9NVE4 849 aa9.81□□□□□ -0.84
VAMP3-201ENST00000054666 TMEM63CQ9P1W3 806 aa9.81□□□□□ -0.84
VAMP3-201ENST00000054666 TBC1D2BQ9UPU7 963 aa9.81□□□□□ -0.84
VAMP3-201ENST00000054666 TAF6LQ9Y6J9 622 aa9.81□□□□□ -0.84
VAMP3-201ENST00000054666 NUTM2BA6NNL0 878 aaPredicted RBP9.8□□□□□ -0.84
VAMP3-201ENST00000054666 NUTM2EB1AL46 878 aaPredicted RBP9.8□□□□□ -0.84
VAMP3-201ENST00000054666 CHGBP05060 677 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 ATP6V1AP38606 617 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 CCDC173Q0VFZ6 552 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 ST3GAL1Q11201 340 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 WASHC4Q2M389 1173 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 LARP1BQ659C4 914 aaKnown RBP9.8□□□□□ -0.84
VAMP3-201ENST00000054666 USP48Q86UV5 1035 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 NUTM2AQ8IVF1 878 aaPredicted RBP9.8□□□□□ -0.84
VAMP3-201ENST00000054666 AK7Q96M32 723 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.8□□□□□ -0.84
VAMP3-201ENST00000054666 MTMR6Q9Y217 621 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 SPATA31A5Q5VU36 1347 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 SPATA31A7Q8IWB4 1347 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 LRP5O75197 1615 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 SYCE3A1L190 88 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 FIBPO43427 364 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 HSPD1P10809 573 aaKnown RBP9.8□□□□□ -0.84
VAMP3-201ENST00000054666 ZSCAN25Q6NSZ9 544 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 LRSAM1Q6UWE0 723 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 Q6ZUG5 572 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 ACSBG1Q96GR2 724 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 CNPY2Q9Y2B0 182 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 CICQ96RK0 1608 aaPredicted RBP9.8□□□□□ -0.84
VAMP3-201ENST00000054666 MYH7P12883 1935 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 TCHHQ07283 1943 aa9.8□□□□□ -0.84
VAMP3-201ENST00000054666 LOC102724428A0A0B4J2F2 783 aa9.79□□□□□ -0.84
VAMP3-201ENST00000054666 SIK1P57059 783 aa9.79□□□□□ -0.84
VAMP3-201ENST00000054666 UBE2HP62256 183 aa9.79□□□□□ -0.84
VAMP3-201ENST00000054666 STK3Q13188 491 aa9.79□□□□□ -0.84
VAMP3-201ENST00000054666 ZNF34Q8IZ26 560 aa9.79□□□□□ -0.84
VAMP3-201ENST00000054666 SYNE4Q8N205 404 aa9.79□□□□□ -0.84
VAMP3-201ENST00000054666 GTF3C6Q969F1 213 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms