RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ZNF461Q8TAF7 563 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 RAB3IL1Q8TBN0 382 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 SUN5Q8TC36 379 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 FAM3CQ92520 227 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 STMN2Q93045 179 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 ISG20Q96AZ6 181 aaKnown RBP1.71□□□□□ -2.14
CD44-239ENST00000639002 TMEM246Q9BRR3 403 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 TMEM43Q9BTV4 400 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 SIAEQ9HAT2 523 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 IL26Q9NPH9 171 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 POLE4Q9NR33 117 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 THUMPD1Q9NXG2 353 aaKnown RBP1.71□□□□□ -2.14
CD44-239ENST00000639002 KLHL28Q9NXS3 571 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 SIGLEC8Q9NYZ4 499 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 CHMP5Q9NZZ3 219 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 ZNF222Q9UK12 451 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 RASD1Q9Y272 281 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 SLC25A15Q9Y619 301 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 YEATS2Q9ULM3 1422 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 TMEM94Q12767 1356 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 OTOGLQ3ZCN5 2332 aa1.71□□□□□ -2.14
CD44-239ENST00000639002 FANCIQ9NVI1 1328 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 A0A1B0GTQ1 180 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 ERICH2A1L162 156 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 C7orf66A4D0T2 115 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 SUPT3HB4E1H0 165 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 HSBP1L1C9JCN9 74 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 C9JVG2 144 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 DNALI1O14645 258 aaPredicted RBP1.7□□□□□ -2.14
CD44-239ENST00000639002 ARPC3O15145 178 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 YKT6O15498 198 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 TAPBPO15533 448 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 RNF13O43567 381 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 FCMRO60667 390 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 TOM1O60784 492 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 CDH16O75309 829 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 MPZL1O95297 269 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 APOA1P02647 267 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 MSR1P21757 451 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 PRKACBP22694 351 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 CMA1P23946 247 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 MMP11P24347 488 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 LAP3P28838 519 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 HADHBP55084 474 aaKnown RBP1.7□□□□□ -2.14
CD44-239ENST00000639002 C21orf59P57076 290 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 MAP3K7CLP57077 242 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 YWHAGP61981 247 aaKnown RBP eCLIP1.7□□□□□ -2.14
CD44-239ENST00000639002 TPM4P67936 248 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 OXA1LQ15070 435 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 GUCA2BQ16661 112 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 KLHL40Q2TBA0 621 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 KLHL38Q2WGJ6 581 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 COX19Q49B96 90 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 PIP5KL1Q5T9C9 394 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 OR52E8Q6IFG1 317 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 CLEC2AQ6UVW9 174 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 KDM7AQ6ZMT4 941 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 SSX9Q7RTT3 188 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 VTCN1Q7Z7D3 282 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 COMTD1Q86VU5 262 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 SPATA24Q86W54 205 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 SLC26A11Q86WA9 606 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 MICU2Q8IYU8 434 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 SYCE1Q8N0S2 351 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 OSR2Q8N2R0 312 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 TCAIMQ8N3R3 496 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 OR8J1Q8NGP2 316 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 OR5W2Q8NH69 310 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 KCNG3Q8TAE7 436 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 TSEN15Q8WW01 171 aaKnown RBP1.7□□□□□ -2.14
CD44-239ENST00000639002 EMG1Q92979 244 aaKnown RBP1.7□□□□□ -2.14
CD44-239ENST00000639002 UBE2E3Q969T4 207 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 PELI1Q96FA3 418 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 CDX2Q99626 313 aaPredicted RBP1.7□□□□□ -2.14
CD44-239ENST00000639002 FOXC2Q99958 501 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 CENPKQ9BS16 269 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 GBA3Q9H227 469 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 BLZF1Q9H2G9 400 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 LRRN3Q9H3W5 708 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 SRMSQ9H3Y6 488 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 QPCTLQ9NXS2 382 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 PIPOXQ9P0Z9 390 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 PCYOX1Q9UHG3 505 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 STAP1Q9ULZ2 295 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 PIGLQ9Y2B2 252 aa1.7□□□□□ -2.14
CD44-239ENST00000639002 TRAV26-1A0A087WT03 109 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 NSG1A0A0A6YYJ2 146 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 LOC100506127A0A0U1RQW1 187 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 TCRBV9S1A1TA0A576 114 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 BTBD17A6NE02 478 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 LOC110117498-PIK3R3F6TDL0 507 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 GOLGA8TH3BQL2 631 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 K7ERQ8 282 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 PEX7O00628 323 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 DYNC1I1O14576 645 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 RNF113AO15541 343 aaKnown RBP1.69□□□□□ -2.14
CD44-239ENST00000639002 ERLIN2O94905 339 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 DIRAS1O95057 198 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 CSTAP01040 98 aa1.69□□□□□ -2.14
CD44-239ENST00000639002 FTH1P02794 183 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms