RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 GOLGA4Q13439 2230 aaKnown RBP9.31□□□□□ -0.92
VPS39-214ENST00000614932 PTPRSQ13332 1948 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 FAM171A2A8MVW0 826 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 TMEM238C9JI98 176 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 IFNW1P05000 195 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 CHRM4P08173 479 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 FCGR3AP08637 254 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 ELFN1P0C7U0 828 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 SDC1P18827 310 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 ATF1P18846 271 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 GABRR1P24046 479 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 GIPRP48546 466 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 PPM1FP49593 454 aaPredicted RBP9.31□□□□□ -0.92
VPS39-214ENST00000614932 IDH3GP51553 393 aaPredicted RBP9.31□□□□□ -0.92
VPS39-214ENST00000614932 CDH11P55287 796 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 FOXK1P85037 733 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 BDH1Q02338 343 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 UBE2V2Q15819 145 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 ZNF77Q15935 545 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 HAGHQ16775 308 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 HYAL4Q2M3T9 481 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 UBE2NLQ5JXB2 153 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 LYPLAL1Q5VWZ2 237 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 LEMD1Q68G75 181 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 ZNF322Q6U7Q0 402 aaPredicted RBP9.31□□□□□ -0.92
VPS39-214ENST00000614932 FAM83HQ6ZRV2 1179 aaPredicted RBP9.31□□□□□ -0.92
VPS39-214ENST00000614932 TTLL10Q6ZVT0 673 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 CLECL1Q8IZS7 167 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 SECTM1Q8WVN6 248 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 HPSE2Q8WWQ2 592 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 NTNG2Q96CW9 530 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 SMIM8Q96KF7 97 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 ZNF426Q9BUY5 554 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 SELENOIQ9C0D9 397 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 IL36AQ9UHA7 158 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 ZNF337Q9Y3M9 751 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 ATG4BQ9Y4P1 393 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 ATG2BQ96BY7 2078 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.31□□□□□ -0.92
VPS39-214ENST00000614932 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.31□□□□□ -0.92
VPS39-214ENST00000614932 SYNDIG1LA6NDD5 238 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 OR2C1O95371 312 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 EN2P19622 333 aaPredicted RBP9.31□□□□□ -0.92
VPS39-214ENST00000614932 TBPP20226 339 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 CD82P27701 267 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 WASP42768 502 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 ERVFC1-1P60608 527 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 ST8SIA6P61647 398 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 POLR2LP62875 67 aaKnown RBP9.31□□□□□ -0.92
VPS39-214ENST00000614932 TSPAN31Q12999 210 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 OR7A5Q15622 319 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 DCST1Q5T197 706 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 HENMT1Q5T8I9 393 aaKnown RBP9.31□□□□□ -0.92
VPS39-214ENST00000614932 TMEM220Q6QAJ8 160 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 PARS2Q7L3T8 475 aaKnown RBP9.31□□□□□ -0.92
VPS39-214ENST00000614932 CEACAM19Q7Z692 300 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 CMTM4Q8IZR5 234 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 GCNT2Q8N0V5 402 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 POGLUT1Q8NBL1 392 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 SEMA6DQ8NFY4 1073 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 OR4E2Q8NGC2 313 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 OR56B2PQ8NGI1 322 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 OR52N4Q8NGI2 321 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 OR4C6Q8NH72 309 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 ASB11Q8WXH4 323 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 RSC1A1Q92681 617 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 CLP1Q92989 425 aaKnown RBP9.31□□□□□ -0.92
VPS39-214ENST00000614932 OR5B2Q96R09 309 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 LYSMD1Q96S90 227 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 INSM2Q96T92 566 aaPredicted RBP9.31□□□□□ -0.92
VPS39-214ENST00000614932 HIST1H2BLQ99880 126 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 LPAR2Q9HBW0 351 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 GPR173Q9NS66 373 aa9.31□□□□□ -0.92
VPS39-214ENST00000614932 H2AFY2Q9P0M6 372 aaPredicted RBP9.31□□□□□ -0.92
VPS39-214ENST00000614932 CPED1A4D0V7 1026 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 SAP18O00422 153 aaKnown RBP9.3□□□□□ -0.92
VPS39-214ENST00000614932 FAAHO00519 579 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 GMFGO60234 142 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 TLX1P31314 330 aaPredicted RBP9.3□□□□□ -0.92
VPS39-214ENST00000614932 SRSF4Q08170 494 aaKnown RBP9.3□□□□□ -0.92
VPS39-214ENST00000614932 LRRC37A5PQ49AS3 106 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 TMEM240Q5SV17 173 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 KHDRBS2Q5VWX1 349 aaKnown RBP9.3□□□□□ -0.92
VPS39-214ENST00000614932 DCXRQ7Z4W1 244 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 FAM160A2Q8N612 972 aaPredicted RBP9.3□□□□□ -0.92
VPS39-214ENST00000614932 C10orf53Q8N6V4 93 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 OR5T1Q8NG75 326 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 RNASEH2CQ8TDP1 164 aaKnown RBP9.3□□□□□ -0.92
VPS39-214ENST00000614932 SLC25A38Q96DW6 304 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 CNN2Q99439 309 aaKnown RBP9.3□□□□□ -0.92
VPS39-214ENST00000614932 ZNF649Q9BS31 505 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 TRIM2Q9C040 744 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 TCFL5Q9UL49 500 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 HDGFL3Q9Y3E1 203 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 YLPM1P49750 1951 aaKnown RBP9.3□□□□□ -0.92
VPS39-214ENST00000614932 SPEGQ15772 3267 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 TRBC2A0A5B9 178 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 CD22P20273 847 aa9.3□□□□□ -0.92
VPS39-214ENST00000614932 CEACAM8P31997 349 aaPredicted RBP9.3□□□□□ -0.92
VPS39-214ENST00000614932 FAUP35544 74 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms