RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	CPEB3	Q8NE35	698 aa	Known RBP	15.01	□□□□□ -0.01
SHKBP1-223	ENST00000600552	TSPEAR	Q8WU66	669 aa		15.01	□□□□□ -0.01
SHKBP1-223	ENST00000600552	TPD52L3	Q96J77	140 aa		15.01	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ZNF426	Q9BUY5	554 aa		15.01	□□□□□ -0.01
SHKBP1-223	ENST00000600552	TMEM120A	Q9BXJ8	343 aa		15.01	□□□□□ -0.01
SHKBP1-223	ENST00000600552	BCL2L14	Q9BZR8	327 aa		15.01	□□□□□ -0.01
SHKBP1-223	ENST00000600552	RACGAP1	Q9H0H5	632 aa		15.01	□□□□□ -0.01
SHKBP1-223	ENST00000600552	PCDHAC1	Q9H158	963 aa		15.01	□□□□□ -0.01
SHKBP1-223	ENST00000600552	EIF3K	Q9UBQ5	218 aa	Known RBP	15.01	□□□□□ -0.01
SHKBP1-223	ENST00000600552	BAG5	Q9UL15	447 aa		15.01	□□□□□ -0.01
SHKBP1-223	ENST00000600552	CACNG2	Q9Y698	323 aa		15.01	□□□□□ -0.01
SHKBP1-223	ENST00000600552	IGHV1-69-2	A0A0G2JMI3	117 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	C5orf49	A4QMS7	147 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	OR5F1	O95221	314 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	MT-ND5	P03915	603 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ZNF32	P17041	273 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	STOM	P27105	288 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	GCH1	P30793	250 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ERVK-25	P63136	954 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	THEM4	Q5T1C6	240 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	CCDC80	Q76M96	950 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	HDX	Q7Z353	690 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	HDDC2	Q7Z4H3	204 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	IGFN1	Q86VF2	1251 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	MICU2	Q8IYU8	434 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	HDAC2	Q92769	488 aa	Known RBP	15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	LRRC58	Q96CX6	371 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	SH3GL1	Q99961	368 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	MRPL13	Q9BYD1	178 aa	Known RBP	15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ZNF665	Q9H7R5	613 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	SIAE	Q9HAT2	523 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	MED31	Q9Y3C7	131 aa		15	□□□□□ -0.01
SHKBP1-223	ENST00000600552	LOC105371242	A0A075B767	164 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	IGKV1D-43	A0A0B4J1Z2	117 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	LOC100653049	A0A140TA62	436 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	MRAS	O14807	208 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	KRT34	O76011	436 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	MPZL1	O95297	269 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	MMP7	P09237	267 aa	Predicted RBP	14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	YAP1	P46937	504 aa	Known RBP	14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	GDI2	P50395	445 aa	Known RBP	14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ZNF81	P51508	661 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	MRPS11	P82912	194 aa	Known RBP	14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	TEK	Q02763	1124 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	MOG	Q16653	247 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	HIST3H3	Q16695	136 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	PCGF3	Q3KNV8	242 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	CYBRD1	Q53TN4	286 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	CLDN22	Q8N7P3	220 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	C10orf82	Q8WW14	230 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	WNK2	Q9Y3S1	2297 aa		14.99	□□□□□ -0.01
SHKBP1-223	ENST00000600552	IGLV3-9	A0A075B6K5	115 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	TRAV20	A0A0B4J274	112 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552		A0A1W2PPL8	197 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ISPD	A4D126	451 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	SNAP29	O95721	258 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	IFNA14	P01570	189 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	IFI30	P13284	250 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	MAK	P20794	623 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	MPV17	P39210	176 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	RBM34	P42696	430 aa	Known RBP	14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	CRYBB2	P43320	205 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ACTG1	P63261	375 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	HFE	Q30201	348 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ZNF718	Q3SXZ3	478 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ALG10	Q5BKT4	473 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ARMC4	Q5T2S8	1044 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ACSM5	Q6NUN0	579 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	CALHM3	Q86XJ0	350 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	SLC25A40	Q8TBP6	338 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ZNF418	Q8TF45	676 aa	Predicted RBP	14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	CCL17	Q92583	94 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	TIMD4	Q96H15	378 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	RBP7	Q96R05	134 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	SAP30L	Q9HAJ7	183 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	UBAP1	Q9NZ09	502 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	RHCG	Q9UBD6	479 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	UGT2A1	Q9Y4X1	527 aa		14.98	□□□□□ -0.01
SHKBP1-223	ENST00000600552	PLSCR5	A0PG75	271 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	CLDN25	C9JDP6	229 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	PLPP2	O43688	288 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	PNP	P00491	289 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ANPEP	P15144	967 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ADRA2C	P18825	462 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	LAP3	P28838	519 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	WNT5A	P41221	380 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	GUCA1A	P43080	201 aa	Predicted RBP	14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	CTXN1	P60606	82 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	MRPS34	P82930	218 aa	Known RBP	14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	PSG4	Q00888	419 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	KLF10	Q13118	480 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	HNRNPA0	Q13151	305 aa	Known RBP	14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	C10orf128	Q5T292	105 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	METTL21C	Q5VZV1	264 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ZNF101	Q8IZC7	436 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	OR51A7	Q8NH64	312 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	ABHD4	Q8TB40	342 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	IPCEF1	Q8WWN9	437 aa	Predicted RBP	14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	STON2	Q8WXE9	905 aa		14.97	□□□□□ -0.01
SHKBP1-223	ENST00000600552	RAB1C	Q92928	201 aa		14.97	□□□□□ -0.01

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