RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 TMEM171Q8WVE6 324 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 FOXN4Q96NZ1 517 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 DHRS9Q9BPW9 319 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 IFT27Q9BW83 186 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 PLA2G12AQ9BZM1 189 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 DENND2DQ9H6A0 471 aaPredicted RBP13.2□□□□□ -0.3
LIG1-219ENST00000600055 RNF121Q9H920 327 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 SIAEQ9HAT2 523 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 MOV10Q9HCE1 1003 aaKnown RBP13.2□□□□□ -0.3
LIG1-219ENST00000600055 CADP27708 2225 aa13.2□□□□□ -0.3
LIG1-219ENST00000600055 ANKRD17O75179 2603 aaKnown RBP13.2□□□□□ -0.3
LIG1-219ENST00000600055 A0A1W2PPL8 197 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 GNGT2O14610 69 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 CTLA4P16410 223 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 NRN1LQ496H8 165 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 CLEC12AQ5QGZ9 265 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 C1orf146Q5VVC0 180 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 OTPQ5XKR4 325 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 ZNF584Q8IVC4 421 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 HS3ST5Q8IZT8 346 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 OR8D4Q8NGM9 314 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 FNDC8Q8TC99 324 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 GIPC3Q8TF64 312 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 UTP4Q969X6 686 aaKnown RBP13.19□□□□□ -0.3
LIG1-219ENST00000600055 PERPQ96FX8 193 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 NIPSNAP1Q9BPW8 284 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 TRAF4Q9BUZ4 470 aaPredicted RBP13.19□□□□□ -0.3
LIG1-219ENST00000600055 SYT4Q9H2B2 425 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 VSX1Q9NZR4 365 aaPredicted RBP13.19□□□□□ -0.3
LIG1-219ENST00000600055 CDH10Q9Y6N8 788 aa13.19□□□□□ -0.3
LIG1-219ENST00000600055 ROS1P08922 2347 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 SLC16A7O60669 478 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 ENTPD5O75356 428 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 TIPRLO75663 272 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 SOX14O95416 240 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 MMP7P09237 267 aaPredicted RBP13.18□□□□□ -0.3
LIG1-219ENST00000600055 APEHP13798 732 aaKnown RBP13.18□□□□□ -0.3
LIG1-219ENST00000600055 HIST1H1CP16403 213 aaKnown RBP13.18□□□□□ -0.3
LIG1-219ENST00000600055 NPR2P20594 1047 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 LAP3P28838 519 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 TTKP33981 857 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 CDKN1AP38936 164 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 CCNIQ14094 377 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 ZSCAN26Q16670 478 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 SLC36A2Q495M3 483 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 SLC35F1Q5T1Q4 408 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 TMEM53Q6P2H8 277 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 VHLLQ6RSH7 139 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 RASSF6Q6ZTQ3 369 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 FOXL2NBQ6ZUU3 175 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 DTX2Q86UW9 622 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 KRTAP1-3Q8IUG1 177 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 OR4K13Q8NH42 304 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 FBXO17Q96EF6 278 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 TSSK2Q96PF2 358 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 FEVQ99581 238 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 DGCR6LQ9BY27 220 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 RERGLQ9H628 205 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 PDP1Q9P0J1 537 aaPredicted RBP13.18□□□□□ -0.3
LIG1-219ENST00000600055 CREBBPQ92793 2442 aa13.18□□□□□ -0.3
LIG1-219ENST00000600055 OVOL3O00110 214 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 ARPC3O15145 178 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 AHCYL1O43865 530 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 MGRN1O60291 552 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 TP53P04637 393 aaPredicted RBP13.17□□□□□ -0.3
LIG1-219ENST00000600055 SERPINA5P05154 406 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 CCL2P13500 99 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 ZNF35P13682 527 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 ZNF32P17041 273 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 HOXB6P17509 224 aaKnown RBP13.17□□□□□ -0.3
LIG1-219ENST00000600055 PRKACGP22612 351 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 PTH2RP49190 550 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 NKX6-1P78426 367 aaPredicted RBP13.17□□□□□ -0.3
LIG1-219ENST00000600055 ENDOGQ14249 297 aaKnown RBP13.17□□□□□ -0.3
LIG1-219ENST00000600055 FAM27BQ5VT28 67 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 AGAP6Q5VW22 663 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 KRT80Q6KB66 452 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 ZNF544Q6NX49 715 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 LEG1Q6P5S2 330 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 UGT2A3Q6UWM9 527 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 SPNS3Q6ZMD2 512 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 ADCK1Q86TW2 530 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 JAZF1Q86VZ6 243 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 FBXL14Q8N1E6 418 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 MUC15Q8N387 334 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 OR52L1Q8NGH7 329 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 NMNAT3Q96T66 252 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 NUAK2Q9H093 628 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 CXorf56Q9H5V9 222 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 YY1AP1Q9H869 796 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 EMC7Q9NPA0 242 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 POLE4Q9NR33 117 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 FAIMQ9NVQ4 179 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 IL20Q9NYY1 176 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 DNAJB9Q9UBS3 223 aa13.17□□□□□ -0.3
LIG1-219ENST00000600055 COA3Q9Y2R0 106 aaPredicted RBP13.17□□□□□ -0.3
LIG1-219ENST00000600055 PRRC2AP48634 2157 aaKnown RBP13.16□□□□□ -0.3
LIG1-219ENST00000600055 DCTN6O00399 190 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 BHLHE40O14503 412 aa13.16□□□□□ -0.3
LIG1-219ENST00000600055 E2F6O75461 281 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms