RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 C12orf49Q9H741 205 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 MARCH7Q9H992 704 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 TAS2R16Q9NYV7 291 aa12.95□□□□□ -0.34
VRK3-212ENST00000596814 EXOSC1Q9Y3B2 195 aaKnown RBP12.95□□□□□ -0.34
VRK3-212ENST00000596814 C12orf71A8MTZ7 269 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 DHHO43323 396 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 IGHV3-9P01782 118 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 TFP02787 698 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 LAP3P28838 519 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 ZNF84P51523 738 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 HSF2Q03933 536 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 EIF2S3LQ2VIR3 472 aaKnown RBP12.94□□□□□ -0.34
VRK3-212ENST00000596814 C3P1Q6ZMU1 363 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 SLC16A9Q7RTY1 509 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.94□□□□□ -0.34
VRK3-212ENST00000596814 SLC35F2Q8IXU6 374 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 RPRMLQ8N4K4 120 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 CNEP1R1Q8N9A8 125 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 NBEAQ8NFP9 2946 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 OR6N2Q8NGY6 317 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 ZFP3Q96NJ6 502 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 RBM24Q9BX46 236 aaKnown RBP12.94□□□□□ -0.34
VRK3-212ENST00000596814 JAM3Q9BX67 310 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 CDCA4Q9BXL8 241 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 CRLF2Q9HC73 371 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 MRPL22Q9NWU5 206 aaKnown RBP12.94□□□□□ -0.34
VRK3-212ENST00000596814 TINAGQ9UJW2 476 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 UGT2A1Q9Y4X1 527 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 FREM1Q5H8C1 2179 aa12.94□□□□□ -0.34
VRK3-212ENST00000596814 ATXN7O15265 892 aaPredicted RBP12.93□□□□□ -0.34
VRK3-212ENST00000596814 CLPTM1O96005 669 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 IL2RAP01589 272 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 HRGP04196 525 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 TIMP3P35625 211 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 OR3A2P47893 321 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 ADAM8P78325 824 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 IRF3Q14653 427 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 TBCEQ15813 527 aaPredicted RBP12.93□□□□□ -0.34
VRK3-212ENST00000596814 KCTD8Q6ZWB6 473 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 ACBD7Q8N6N7 88 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 OR6K3Q8NGY3 331 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 SMAP2Q8WU79 429 aaPredicted RBP12.93□□□□□ -0.34
VRK3-212ENST00000596814 TBX5Q99593 518 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 WDR76Q9H967 626 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 SEC61A2Q9H9S3 476 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 VCX3AQ9NNX9 186 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 INPP5EQ9NRR6 644 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 SLC7A10Q9NS82 523 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 CHCHD3Q9NX63 227 aaKnown RBP12.93□□□□□ -0.34
VRK3-212ENST00000596814 UPB1Q9UBR1 384 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 PHF3Q92576 2039 aaKnown RBP12.93□□□□□ -0.34
VRK3-212ENST00000596814 RP1L1Q8IWN7 2480 aaPredicted RBP12.93□□□□□ -0.34
VRK3-212ENST00000596814 ZNF587BE7ETH6 402 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 MPZL1O95297 269 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 CRHP06850 196 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 OR2T7P0C7T2 308 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 TMIGD3P0DMS9 266 aaPredicted RBP12.93□□□□□ -0.34
VRK3-212ENST00000596814 ZNF823P16415 610 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 CDAP32320 146 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 GUCA1AP43080 201 aaPredicted RBP12.93□□□□□ -0.34
VRK3-212ENST00000596814 KIR2DL2P43627 348 aaPredicted RBP12.93□□□□□ -0.34
VRK3-212ENST00000596814 MAP2K4P45985 399 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 ENTPD1P49961 510 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 ROR2Q01974 943 aaKnown RBP12.93□□□□□ -0.34
VRK3-212ENST00000596814 MEP1BQ16820 701 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 CEACAM16Q2WEN9 425 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 RNLSQ5VYX0 342 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 OTPQ5XKR4 325 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 FOXL2NBQ6ZUU3 175 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 LINGO2Q7L985 606 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 UBE2J2Q8N2K1 259 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 OR10H5Q8NGA6 315 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 OR2T27Q8NH04 317 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 C11orf40Q8WZ69 217 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 TTYH2Q9BSA4 534 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 YIPF3Q9GZM5 350 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 GPR35Q9HC97 309 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 POLE4Q9NR33 117 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 PRSS50Q9UI38 385 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 SH3BGRL2Q9UJC5 107 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 ERGIC3Q9Y282 383 aa12.93□□□□□ -0.34
VRK3-212ENST00000596814 DAPL1A0PJW8 107 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 MYL12BO14950 172 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 TOXO94900 526 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 SPARCP09486 303 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 GLI4P10075 376 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 PCMT1P22061 227 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 ETV1P50549 477 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 EMX1Q04741 257 aaPredicted RBP12.92□□□□□ -0.34
VRK3-212ENST00000596814 FOXF2Q12947 444 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 STK11Q15831 433 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 TFAP2EQ6VUC0 442 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 DPY19L4Q7Z388 723 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 ABHD12BQ7Z5M8 362 aaPredicted RBP12.92□□□□□ -0.34
VRK3-212ENST00000596814 CDC20BQ86Y33 519 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 ZNF837Q96EG3 531 aaPredicted RBP12.92□□□□□ -0.34
VRK3-212ENST00000596814 MNTQ99583 582 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 MND1Q9BWT6 205 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 NELFAQ9H3P2 528 aa12.92□□□□□ -0.34
VRK3-212ENST00000596814 ACOT13Q9NPJ3 140 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms