RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 KRTAP1-1Q07627 177 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 SEC23BQ15437 767 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 ZBED5Q49AG3 693 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 TMEM53Q6P2H8 277 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 SLC25A47Q6Q0C1 308 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 PHC2Q8IXK0 858 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 CLDN22Q8N7P3 220 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 FNDC8Q8TC99 324 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 NSMAFQ92636 917 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 NABP1Q96AH0 204 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 FUZQ9BT04 418 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 NDEL1Q9GZM8 345 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 FBXO9Q9UK97 447 aaPredicted RBP13.04□□□□□ -0.32
TRIM28-205ENST00000595028 FKBP7Q9Y680 259 aa13.04□□□□□ -0.32
TRIM28-205ENST00000595028 VSTM5A8MXK1 200 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 GPRIN2O60269 458 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 MGRN1O60291 552 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 CD14P08571 375 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 MMP7P09237 267 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-205ENST00000595028 CSF3P09919 207 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 ZNF26P17031 533 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-205ENST00000595028 CDAP32320 146 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 RPL4P36578 427 aaKnown RBP13.03□□□□□ -0.32
TRIM28-205ENST00000595028 OMPP47874 163 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 RPS23P62266 143 aaKnown RBP13.03□□□□□ -0.32
TRIM28-205ENST00000595028 ERVK-25P63136 954 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 GALK2Q01415 458 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 SPIBQ01892 262 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 THEM4Q5T1C6 240 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 SVOPLQ8N434 492 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 ARIH2OSQ8N7S6 290 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 MAPK1IP1LQ8NDC0 245 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 SLC30A7Q8NEW0 376 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 OR10H5Q8NGA6 315 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 OR52J3Q8NH60 311 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 MCUR1Q96AQ8 359 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 NSL1Q96IY1 281 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 RSRC1Q96IZ7 334 aaKnown RBP13.03□□□□□ -0.32
TRIM28-205ENST00000595028 RHNO1Q9BSD3 238 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 C1orf198Q9H425 327 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 RNF121Q9H920 327 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 SIAEQ9HAT2 523 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 KRCC1Q9NPI7 259 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-205ENST00000595028 SLC7A8Q9UHI5 535 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 SIGLEC7Q9Y286 467 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 ADAM18Q9Y3Q7 739 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 SPEF1Q9Y4P9 236 aa13.03□□□□□ -0.32
TRIM28-205ENST00000595028 A0A096LNT2 108 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 B2RBV5 119 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 H7C1C5 153 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 LY6HO94772 140 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 NDUFB2O95178 105 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 F12P00748 615 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-205ENST00000595028 FABP3P05413 133 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 ATP6V1B2P21281 511 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 CALB2P22676 271 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 GLRXP35754 106 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 LCN6P62502 163 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 MSMPQ1L6U9 139 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 MESTQ5EB52 335 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 FOXL2NBQ6ZUU3 175 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 FAM122BQ7Z309 247 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 ARHGAP24Q8N264 748 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 LRRC18Q8N456 261 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 FAM168AQ92567 244 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 MRPL24Q96A35 216 aaKnown RBP13.02□□□□□ -0.33
TRIM28-205ENST00000595028 ZNF570Q96NI8 536 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 RBP7Q96R05 134 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 GPX7Q96SL4 187 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-205ENST00000595028 VRK1Q99986 396 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-205ENST00000595028 GRHPRQ9UBQ7 328 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 AURKCQ9UQB9 309 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 CMAHPQ9Y471 501 aa13.02□□□□□ -0.33
TRIM28-205ENST00000595028 TMEM129A0AVI4 362 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 SH3PXD2BA1X283 911 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 PTP4A3O75365 173 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 SNAP29O95721 258 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 SLC25A16P16260 332 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 ZNF32P17041 273 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 SMIM11AP58511 58 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 KRR1Q13601 381 aaKnown RBP13.01□□□□□ -0.33
TRIM28-205ENST00000595028 TBC1D28Q2M2D7 210 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 FAM27BQ5VT28 67 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 PAQR4Q8N4S7 273 aaPredicted RBP13.01□□□□□ -0.33
TRIM28-205ENST00000595028 C10orf105Q8TEF2 133 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 Q96M85 177 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 DOK1Q99704 481 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 MRPL37Q9BZE1 423 aaKnown RBP13.01□□□□□ -0.33
TRIM28-205ENST00000595028 CDH20Q9HBT6 801 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 DYNLRB1Q9NP97 96 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 CCNB1IP1Q9NPC3 277 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 IL1RAPQ9NPH3 570 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 FAM53CQ9NYF3 392 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 ACTR3BQ9P1U1 418 aa13.01□□□□□ -0.33
TRIM28-205ENST00000595028 TEX13CA0A0J9YWL9 993 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 IQCMA0A1B0GVH7 501 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 A0A1W2PPL8 197 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 SLC22A23A1A5C7 686 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 UNC119BA6NIH7 251 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 XKRYO14609 159 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms