RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 SLC29A1Q99808 456 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 HDHD3Q9BSH5 251 aaPredicted RBP2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 MTG1Q9BT17 334 aaPredicted RBP2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 CDC42EP4Q9H3Q1 356 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 RPF2Q9H7B2 306 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 TMEM165Q9HC07 324 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 SLCO1B3Q9NPD5 702 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 HRASLS2Q9NWW9 162 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 LYARQ9NX58 379 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 ZNF629Q9UEG4 869 aaPredicted RBP2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 CD84Q9UIB8 345 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 WSB1Q9Y6I7 421 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 CNTNAP1P78357 1384 aa2.43□□□□□ -2.02
SMCHD1-209ENST00000583441 NFASCO94856 1347 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 MAPK8IP3Q9UPT6 1336 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 AKNAQ7Z591 1439 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 CEMIPQ8WUJ3 1361 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 TRBV9A0A0B4J1U6 114 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 SMCO2A6NFE2 343 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 F6UB75 175 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 CASQ2O14958 399 aaPredicted RBP2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 CHST1O43916 411 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 OR2F2O95006 317 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 AIFM1O95831 613 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 TSPAN13O95857 204 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 CCNB1P14635 433 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 HOXA9P31269 272 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 HRH1P35367 487 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 MRPL19P49406 292 aaKnown RBP2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 CYB561P49447 251 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 RAB9AP51151 201 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 NUTF2P61970 127 aaKnown RBP2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 SLC7A9P82251 487 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 REG3AQ06141 175 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 CAPRIN1Q14444 709 aaKnown RBP2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 CHRNA6Q15825 494 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 KRTAP21-2Q3LI59 83 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 PPM1LQ5SGD2 360 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 ANKRD22Q5VYY1 191 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 REEP3Q6NUK4 255 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 ZNF493Q6ZR52 646 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 HDDC2Q7Z4H3 204 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 LUZP2Q86TE4 346 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 LINC01551Q86U37 167 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 BIVMQ86UB2 503 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 SLC34A3Q8N130 599 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 Q8N9L7 120 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 OR10G4Q8NGN3 311 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 OR2A1Q8NGT9 310 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 ZNF502Q8TBZ5 544 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 FAM3DQ96BQ1 224 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 SEH1LQ96EE3 360 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 SERPINB12Q96P63 405 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 LZTS2Q9BRK4 669 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 SLC17A9Q9BYT1 436 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 OR51M1Q9H341 326 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 OR12D3Q9UGF7 316 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 RAB26Q9ULW5 256 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 NEU3Q9UQ49 428 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 CAB39Q9Y376 341 aaPredicted RBP2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 F11RQ9Y624 299 aaKnown RBP2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 MAP3K15Q6ZN16 1313 aa2.42□□□□□ -2.02
SMCHD1-209ENST00000583441 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 ZNF816-ZNF321PA0A0X1KG74 233 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 PLAC8L1A1L4L8 177 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 OR2AG2A6NM03 316 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 HIDE1A8MVS5 230 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 H7C0C1 242 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 WRBO00258 174 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 DNALI1O14645 258 aaPredicted RBP2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 KMOO15229 486 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 DFNA5O60443 496 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 KLHL41O60662 606 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 IGLV2-23P01705 113 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 MYL2P10916 166 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 SFTPCP11686 197 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 F2RP25116 425 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 ATP5OP48047 213 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 NCBP2P52298 156 aaKnown RBP eCLIP2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 IRX3P78415 501 aaPredicted RBP2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 MECOMQ03112 1051 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 IL18Q14116 193 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 GGTLC2Q14390 218 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 PON3Q15166 354 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 TSPO2Q5TGU0 170 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 AGBL2Q5U5Z8 902 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 TEX43Q6ZNM6 134 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 EIF3MQ7L2H7 374 aaKnown RBP2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 KRTAP11-1Q8IUC1 163 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 PCP2Q8IVA1 136 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 ENTHD1Q8IYW4 607 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 HSD17B11Q8NBQ5 300 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 GIMAP1Q8WWP7 306 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 SRSF12Q8WXF0 261 aaKnown RBP2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 TMEM158Q8WZ71 300 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 CREB3L1Q96BA8 519 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 DNAJC1Q96KC8 554 aaKnown RBP2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 GSDMAQ96QA5 445 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 C11orf70Q9BRQ4 267 aa2.41□□□□□ -2.02
SMCHD1-209ENST00000583441 IFI27L2Q9H2X8 130 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms