RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ACOXLQ9NUZ1 547 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 TXNL4BQ9NX01 149 aaKnown RBP9.36□□□□□ -0.91
SS18-217ENST00000580958 ST6GALNAC2Q9UJ37 374 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 KCNG2Q9UJ96 466 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 LAMP5Q9UJQ1 280 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 LIPGQ9Y5X9 500 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 MED12LQ86YW9 2145 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 ZFHX4Q86UP3 3567 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 TRDV1A0A1B0GX56 115 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 METTL15A6NJ78 407 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 CD8B2A6NJW9 211 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 CENPBD1B2RD01 187 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 ACOT7O00154 380 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 PHYHO14832 338 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 OGG1O15527 345 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 CLPXO76031 633 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 GAAP10253 952 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 CD8BP10966 210 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 ZNF823P16415 610 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 ALOX5APP20292 161 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 CLDN18P56856 261 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 ADAM8P78325 824 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 GLO1Q04760 184 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 SRYQ05066 204 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 SLC3A1Q07837 685 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 SLC17A1Q14916 467 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 SLC10A1Q14973 349 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 RNFT1Q5M7Z0 435 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 THEM4Q5T1C6 240 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 ABLIM2Q6H8Q1 611 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 C22orf42Q6IC83 251 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 PLEKHG7Q6ZR37 379 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 ASB18Q6ZVZ8 466 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 FAM220AQ7Z4H9 259 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 FAM109AQ8N4B1 249 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 YIPF7Q8N8F6 280 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 SLC26A10Q8NG04 563 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 OTOSQ8NHW6 89 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 TBC1D15Q8TC07 691 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 THEM6Q8WUY1 208 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 ABTB1Q969K4 478 aaPredicted RBP9.35□□□□□ -0.91
SS18-217ENST00000580958 ZNF385AQ96PM9 386 aaKnown RBP9.35□□□□□ -0.91
SS18-217ENST00000580958 DEFB127Q9H1M4 99 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 QPCTLQ9NXS2 382 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 MRM2Q9UI43 246 aaKnown RBP9.35□□□□□ -0.91
SS18-217ENST00000580958 IKZF2Q9UKS7 526 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 WASF3Q9UPY6 502 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 TMEM14AQ9Y6G1 99 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 PMF1-BGLAPU3KQ54 211 aa9.35□□□□□ -0.91
SS18-217ENST00000580958 GTF3C1Q12789 2109 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 TRAV17A0A0B4J275 112 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 A0A1W2PPL8 197 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 GABRPO00591 440 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 PLPP2O43688 288 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 RGS9O75916 674 aaPredicted RBP9.34□□□□□ -0.91
SS18-217ENST00000580958 RPP14O95059 124 aaKnown RBP9.34□□□□□ -0.91
SS18-217ENST00000580958 ABHD16AO95870 558 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 HLA-DPB1P04440 258 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 KRT8P05787 483 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 QDPRP09417 244 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 ZNF708P17019 499 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 EDNRAP25101 427 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 LAP3P28838 519 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 CSNK1A1P48729 337 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 TUBA1BP68363 451 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 SIRPAP78324 504 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 EIF2B1Q14232 305 aaKnown RBP9.34□□□□□ -0.91
SS18-217ENST00000580958 CDK5R1Q15078 307 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 DMKNQ6E0U4 476 aaPredicted RBP9.34□□□□□ -0.91
SS18-217ENST00000580958 SLC18B1Q6NT16 456 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 RPL22L1Q6P5R6 122 aaKnown RBP9.34□□□□□ -0.91
SS18-217ENST00000580958 CD200R1LQ6Q8B3 271 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 TUBA1AQ71U36 451 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 GLB1L2Q8IW92 636 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 MEIOBQ8N635 442 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 ZIC4Q8N9L1 334 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 OR10H5Q8NGA6 315 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 OR6N1Q8NGY5 312 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 SNIP1Q8TAD8 396 aaKnown RBP9.34□□□□□ -0.91
SS18-217ENST00000580958 C11orf40Q8WZ69 217 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 TMEM54Q969K7 222 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 MCHR2Q969V1 340 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 ZNF775Q96BV0 537 aaPredicted RBP9.34□□□□□ -0.91
SS18-217ENST00000580958 OR2M2Q96R28 347 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 DCLRE1CQ96SD1 692 aaKnown RBP9.34□□□□□ -0.91
SS18-217ENST00000580958 SMAD5Q99717 465 aaKnown RBP9.34□□□□□ -0.91
SS18-217ENST00000580958 SF3B5Q9BWJ5 86 aaKnown RBP9.34□□□□□ -0.91
SS18-217ENST00000580958 HDHD5Q9BXW7 423 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 EXO5Q9H790 373 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 ACKR4Q9NPB9 350 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 TIGARQ9NQ88 270 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 SLCO1C1Q9NYB5 712 aa9.34□□□□□ -0.91
SS18-217ENST00000580958 CCDC59Q9P031 241 aaKnown RBP9.34□□□□□ -0.91
SS18-217ENST00000580958 SPTBN4Q9H254 2564 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 ZNF716A6NP11 495 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 DVL2O14641 736 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 CYTIPO60759 359 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 UPK3AO75631 287 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 CDRT1O95170 752 aa9.33□□□□□ -0.92
SS18-217ENST00000580958 WNT11O96014 354 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms