RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 TINAGQ9UJW2 476 aa22.17■■□□□ 1.14
SHMT1-207ENST00000580002 A0A1W2PQL4 384 aaPredicted RBP22.16■■□□□ 1.14
SHMT1-207ENST00000580002 DCKP27707 260 aa22.16■■□□□ 1.14
SHMT1-207ENST00000580002 NCCRP1Q6ZVX7 275 aaPredicted RBP22.16■■□□□ 1.14
SHMT1-207ENST00000580002 SLC35F2Q8IXU6 374 aa22.16■■□□□ 1.14
SHMT1-207ENST00000580002 SLC26A10Q8NG04 563 aa22.16■■□□□ 1.14
SHMT1-207ENST00000580002 C11orf40Q8WZ69 217 aa22.16■■□□□ 1.14
SHMT1-207ENST00000580002 RBM24Q9BX46 236 aaKnown RBP22.16■■□□□ 1.14
SHMT1-207ENST00000580002 ULBP2Q9BZM5 246 aa22.16■■□□□ 1.14
SHMT1-207ENST00000580002 CRLF2Q9HC73 371 aa22.16■■□□□ 1.14
SHMT1-207ENST00000580002 EMC7Q9NPA0 242 aa22.16■■□□□ 1.14
SHMT1-207ENST00000580002 SH3BGRL2Q9UJC5 107 aa22.16■■□□□ 1.14
SHMT1-207ENST00000580002 KALRNO60229 2985 aa22.16■■□□□ 1.14
SHMT1-207ENST00000580002 SFTPCP11686 197 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 TUBA4AP68366 448 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 GUSBP1Q15486 140 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 DPY19L4Q7Z388 723 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 OR6N2Q8NGY6 317 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 MARCH7Q9H992 704 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 ERVK13-1Q9NX77 482 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 DOCK7Q96N67 2140 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 ZNF593O00488 134 aaPredicted RBP22.15■■□□□ 1.14
SHMT1-207ENST00000580002 DHHO43323 396 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 AKAP8O43823 692 aaKnown RBP22.15■■□□□ 1.14
SHMT1-207ENST00000580002 SS18L1O75177 396 aaPredicted RBP22.15■■□□□ 1.14
SHMT1-207ENST00000580002 FCGR2AP12318 317 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 ZNF133P52736 654 aaPredicted RBP22.15■■□□□ 1.14
SHMT1-207ENST00000580002 HSF2Q03933 536 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 C1orf185Q5T7R7 199 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 C9orf135Q5VTT2 229 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 NAXEQ8NCW5 288 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 GMPPAQ96IJ6 420 aaPredicted RBP22.15■■□□□ 1.14
SHMT1-207ENST00000580002 AMELYQ99218 206 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 ZNF835Q9Y2P0 537 aa22.15■■□□□ 1.14
SHMT1-207ENST00000580002 IGSF10Q6WRI0 2623 aa22.14■■□□□ 1.14
SHMT1-207ENST00000580002 COL6A6A6NMZ7 2263 aa22.14■■□□□ 1.14
SHMT1-207ENST00000580002 CD8B2A6NJW9 211 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 PSMD9O00233 223 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 SLC19A2O60779 497 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 LAP3P28838 519 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 KIR2DL2P43627 348 aaPredicted RBP22.14■■□□□ 1.13
SHMT1-207ENST00000580002 GLO1Q04760 184 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 VWA1Q6PCB0 445 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 DNM1P34Q6PK57 102 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 SLC16A9Q7RTY1 509 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 LINC00346Q8IVM7 164 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 GLB1L2Q8IW92 636 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 GPR137CQ8N3F9 429 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 ACBD7Q8N6N7 88 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 CPT1CQ8TCG5 803 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 INTS14Q96SY0 518 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 SLCO5A1Q9H2Y9 848 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 ISG20L2Q9H9L3 353 aaKnown RBP22.14■■□□□ 1.13
SHMT1-207ENST00000580002 GPR35Q9HC97 309 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 KCNG2Q9UJ96 466 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 EPG5Q9HCE0 2579 aa22.14■■□□□ 1.13
SHMT1-207ENST00000580002 CENPBD1B2RD01 187 aa22.13■■□□□ 1.13
SHMT1-207ENST00000580002 WNT11O96014 354 aa22.13■■□□□ 1.13
SHMT1-207ENST00000580002 C10orf128Q5T292 105 aa22.13■■□□□ 1.13
SHMT1-207ENST00000580002 CORO6Q6QEF8 472 aa22.13■■□□□ 1.13
SHMT1-207ENST00000580002 CDC20BQ86Y33 519 aa22.13■■□□□ 1.13
SHMT1-207ENST00000580002 NANOGP1Q8N7R0 232 aa22.13■■□□□ 1.13
SHMT1-207ENST00000580002 CNEP1R1Q8N9A8 125 aa22.13■■□□□ 1.13
SHMT1-207ENST00000580002 POMGNT2Q8NAT1 580 aa22.13■■□□□ 1.13
SHMT1-207ENST00000580002 LSM2Q9Y333 95 aaKnown RBP22.13■■□□□ 1.13
SHMT1-207ENST00000580002 PCDHGB1Q9Y5G3 927 aa22.13■■□□□ 1.13
SHMT1-207ENST00000580002 SHANK1Q9Y566 2161 aa22.13■■□□□ 1.13
SHMT1-207ENST00000580002 DAPL1A0PJW8 107 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 MBD3L4A6NDZ8 208 aaPredicted RBP22.12■■□□□ 1.13
SHMT1-207ENST00000580002 MBD3L3A6NE82 208 aaPredicted RBP22.12■■□□□ 1.13
SHMT1-207ENST00000580002 MBD3L5A6NJ08 208 aaPredicted RBP22.12■■□□□ 1.13
SHMT1-207ENST00000580002 WDR1O75083 606 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 GABRA1P14867 456 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 ALDH3B2P48448 385 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 ADAM8P78325 824 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 CEACAM16Q2WEN9 425 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 SATL1Q86VE3 508 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 ZNF100Q8IYN0 542 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 MBD3L2Q8NHZ7 208 aaPredicted RBP22.12■■□□□ 1.13
SHMT1-207ENST00000580002 APH1AQ96BI3 265 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 PARPBPQ9NWS1 579 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 MRPS14O60783 128 aaKnown RBP22.12■■□□□ 1.13
SHMT1-207ENST00000580002 SPARCP09486 303 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 GP2P55259 537 aaKnown RBP22.12■■□□□ 1.13
SHMT1-207ENST00000580002 ROR2Q01974 943 aaKnown RBP22.12■■□□□ 1.13
SHMT1-207ENST00000580002 POU4F2Q12837 409 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 SGCAQ16586 387 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 FAM214BQ7L5A3 538 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 GATAD2BQ8WXI9 593 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 NABP1Q96AH0 204 aa22.12■■□□□ 1.13
SHMT1-207ENST00000580002 EXOSC1Q9Y3B2 195 aaKnown RBP22.12■■□□□ 1.13
SHMT1-207ENST00000580002 CACNA1CQ13936 2221 aa22.11■■□□□ 1.13
SHMT1-207ENST00000580002 IRGMA1A4Y4 181 aa22.11■■□□□ 1.13
SHMT1-207ENST00000580002 FIGNL2A6NMB9 653 aa22.11■■□□□ 1.13
SHMT1-207ENST00000580002 EDN3P14138 238 aa22.11■■□□□ 1.13
SHMT1-207ENST00000580002 TBCEQ15813 527 aaPredicted RBP22.11■■□□□ 1.13
SHMT1-207ENST00000580002 ALG8Q9BVK2 526 aa22.11■■□□□ 1.13
SHMT1-207ENST00000580002 POLE4Q9NR33 117 aa22.11■■□□□ 1.13
SHMT1-207ENST00000580002 NBASA2RRP1 2371 aa22.11■■□□□ 1.13
SHMT1-207ENST00000580002 DPPA5A6NC42 116 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms