RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 SH3GL3Q99963 347 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 PTDSS2Q9BVG9 487 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 ZNF702PQ9H963 129 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 MID1IP1Q9NPA3 183 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 C1orf109Q9NX04 203 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 CCL27Q9Y4X3 112 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 KMT2AQ03164 3969 aa13.2□□□□□ -0.3
VPS53-218ENST00000575207 CLIC3O95833 236 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 PROCP04070 461 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 LAMP1P11279 417 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 CCNOP22674 350 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 PRPH2P23942 346 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 APLNRP35414 380 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 SOAT1P35610 550 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 RPS5P46782 204 aaKnown RBP13.19□□□□□ -0.3
VPS53-218ENST00000575207 ANXA11P50995 505 aaKnown RBP13.19□□□□□ -0.3
VPS53-218ENST00000575207 SMU1Q2TAY7 513 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 ATAD3BQ5T9A4 648 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 UNQ9370/PRO34162Q6UXP9 181 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 UNQ6126/PRO20091Q6UXV3 157 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 Q6ZR03 302 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 ZNF662Q6ZS27 426 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 ZER1Q7Z7L7 766 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 UEVLDQ8IX04 471 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 OR7A2PQ8NGA2 310 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 C8orf46Q8TAG6 207 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 STK35Q8TDR2 534 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 TFAP2CQ92754 450 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 FCRL1Q96LA6 429 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 OR2V2Q96R30 315 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 ATP6V1HQ9UI12 483 aa13.19□□□□□ -0.3
VPS53-218ENST00000575207 M0R082 166 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 AIM2O14862 343 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 TIMM8AO60220 97 aaPredicted RBP13.18□□□□□ -0.3
VPS53-218ENST00000575207 FARS2O95363 451 aaKnown RBP13.18□□□□□ -0.3
VPS53-218ENST00000575207 CYB5R3P00387 301 aaPredicted RBP13.18□□□□□ -0.3
VPS53-218ENST00000575207 PAHP00439 452 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 TAC1P20366 129 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 IMPDH1P20839 514 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 AHCYP23526 432 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 MAPK1P28482 360 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 HPCAL1P37235 193 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 MAGEA12P43365 314 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 HABP2Q14520 560 aaPredicted RBP13.18□□□□□ -0.3
VPS53-218ENST00000575207 ATG16L1Q676U5 607 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 CADM2Q8N3J6 435 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 BEND2Q8NDZ0 799 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 ZNF420Q8TAQ5 688 aaPredicted RBP13.18□□□□□ -0.3
VPS53-218ENST00000575207 ZNF417Q8TAU3 575 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 SLC7A13Q8TCU3 470 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 ROPN1LQ96C74 230 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 ZNF587Q96SQ5 575 aaPredicted RBP13.18□□□□□ -0.3
VPS53-218ENST00000575207 MCRIP2Q9BUT9 160 aaKnown RBP13.18□□□□□ -0.3
VPS53-218ENST00000575207 OR51I1Q9H343 314 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 EDA2RQ9HAV5 297 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 EIF3KQ9UBQ5 218 aaKnown RBP13.18□□□□□ -0.3
VPS53-218ENST00000575207 SNX24Q9Y343 169 aa13.18□□□□□ -0.3
VPS53-218ENST00000575207 A0A1B0GVI7 797 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 NPFFO15130 113 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 CFLARO15519 480 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 AGR2O95994 175 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 THY1P04216 161 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 LY6EQ16553 131 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 ZNF181Q2M3W8 571 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 SLC36A2Q495M3 483 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 WBP2NLQ6ICG8 309 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 NHLRC1Q6VVB1 395 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 LHFPL2Q6ZUX7 228 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 C6orf120Q7Z4R8 191 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 VMO1Q7Z5L0 202 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 SBSPONQ8IVN8 264 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 KLHL7Q8IXQ5 586 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 XAGE5Q8WWM1 108 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 ISOC1Q96CN7 298 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 TUBGCP3Q96CW5 907 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 SLC35G5Q96KT7 338 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 TECTBQ96PL2 329 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 OSBPL9Q96SU4 736 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 DCTN5Q9BTE1 182 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 MAN2C1Q9NTJ4 1040 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 TMEM38BQ9NVV0 291 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 KPTNQ9Y664 436 aa13.17□□□□□ -0.3
VPS53-218ENST00000575207 FBP2O00757 339 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 NPHS1O60500 1241 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 CRCPO75575 148 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 HLA-DOBP13765 273 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 ARRB2P32121 409 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 COPZ1P61923 177 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 HPCAP84074 193 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 FUT5Q11128 374 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 PSG7Q13046 419 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 CDONQ4KMG0 1287 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 RUNDC3AQ59EK9 446 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 LIPMQ5VYY2 423 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 RFPL4BQ6ZWI9 263 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 H1FNTQ75WM6 255 aaPredicted RBP13.16□□□□□ -0.3
VPS53-218ENST00000575207 IGFN1Q86VF2 1251 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 ZNF440Q8IYI8 595 aa13.16□□□□□ -0.3
VPS53-218ENST00000575207 RBM15BQ8NDT2 890 aaKnown RBP13.16□□□□□ -0.3
VPS53-218ENST00000575207 HIPK4Q8NE63 616 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 189.2 ms