RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 CHD3Q12873 2000 aaKnown RBP15.07■□□□□ 0
CLN3-217ENST00000565354 DEFB108AA8MXU0 73 aa15.06■□□□□ 0
CLN3-217ENST00000565354 H3BN98 237 aa15.06■□□□□ 0
CLN3-217ENST00000565354 SOX14O95416 240 aa15.06■□□□□ 0
CLN3-217ENST00000565354 SLC2A10O95528 541 aa15.06■□□□□ 0
CLN3-217ENST00000565354 CD3EP07766 207 aa15.06■□□□□ 0
CLN3-217ENST00000565354 CD79AP11912 226 aa15.06■□□□□ 0
CLN3-217ENST00000565354 ZNF23P17027 643 aa15.06■□□□□ 0
CLN3-217ENST00000565354 PAX7P23759 505 aa15.06■□□□□ 0
CLN3-217ENST00000565354 TUBA1BP68363 451 aa15.06■□□□□ 0
CLN3-217ENST00000565354 TUBA4AP68366 448 aa15.06■□□□□ 0
CLN3-217ENST00000565354 FMODQ06828 376 aa15.06■□□□□ 0
CLN3-217ENST00000565354 COX10Q12887 443 aa15.06■□□□□ 0
CLN3-217ENST00000565354 HIST3H3Q16695 136 aa15.06■□□□□ 0
CLN3-217ENST00000565354 MESTQ5EB52 335 aa15.06■□□□□ 0
CLN3-217ENST00000565354 TUBA1AQ71U36 451 aa15.06■□□□□ 0
CLN3-217ENST00000565354 FAM122BQ7Z309 247 aa15.06■□□□□ 0
CLN3-217ENST00000565354 ADCK1Q86TW2 530 aa15.06■□□□□ 0
CLN3-217ENST00000565354 HIPK1Q86Z02 1210 aa15.06■□□□□ 0
CLN3-217ENST00000565354 CCDC36Q8IYA8 594 aa15.06■□□□□ 0
CLN3-217ENST00000565354 HS3ST5Q8IZT8 346 aa15.06■□□□□ 0
CLN3-217ENST00000565354 CLDN22Q8N7P3 220 aa15.06■□□□□ 0
CLN3-217ENST00000565354 TEX47Q8TBZ9 253 aa15.06■□□□□ 0
CLN3-217ENST00000565354 NRBF2Q96F24 287 aa15.06■□□□□ 0
CLN3-217ENST00000565354 TSSK6Q9BXA6 273 aa15.06■□□□□ 0
CLN3-217ENST00000565354 RERGLQ9H628 205 aa15.06■□□□□ 0
CLN3-217ENST00000565354 DENND2DQ9H6A0 471 aaPredicted RBP15.06■□□□□ 0
CLN3-217ENST00000565354 SMURF2Q9HAU4 748 aa15.06■□□□□ 0
CLN3-217ENST00000565354 MOV10Q9HCE1 1003 aaKnown RBP15.06■□□□□ 0
CLN3-217ENST00000565354 ROS1P08922 2347 aa15.05■□□□□ 0
CLN3-217ENST00000565354 ARPC4-TTLL3A0A0A6YYG9 625 aa15.05■□□□□ -0
CLN3-217ENST00000565354 A0A1W2PPL8 197 aa15.05■□□□□ -0
CLN3-217ENST00000565354 IMPA2O14732 288 aa15.05■□□□□ -0
CLN3-217ENST00000565354 AHCYL1O43865 530 aa15.05■□□□□ -0
CLN3-217ENST00000565354 RENP00797 406 aa15.05■□□□□ -0
CLN3-217ENST00000565354 APEHP13798 732 aaKnown RBP15.05■□□□□ -0
CLN3-217ENST00000565354 PRKACGP22612 351 aa15.05■□□□□ -0
CLN3-217ENST00000565354 C10orf128Q5T292 105 aa15.05■□□□□ -0
CLN3-217ENST00000565354 TMEM108Q6UXF1 575 aa15.05■□□□□ -0
CLN3-217ENST00000565354 BOD1Q96IK1 185 aa15.05■□□□□ -0
CLN3-217ENST00000565354 KCNS3Q9BQ31 491 aa15.05■□□□□ -0
CLN3-217ENST00000565354 SEMA6AQ9H2E6 1030 aa15.05■□□□□ -0
CLN3-217ENST00000565354 KCNN2Q9H2S1 579 aa15.05■□□□□ -0
CLN3-217ENST00000565354 NELFAQ9H3P2 528 aa15.05■□□□□ -0
CLN3-217ENST00000565354 SEC61A2Q9H9S3 476 aa15.05■□□□□ -0
CLN3-217ENST00000565354 NTN4Q9HB63 628 aa15.05■□□□□ -0
CLN3-217ENST00000565354 TMEM38BQ9NVV0 291 aa15.05■□□□□ -0
CLN3-217ENST00000565354 SLC22A23A1A5C7 686 aa15.04■□□□□ -0
CLN3-217ENST00000565354 PRSS37A4D1T9 235 aa15.04■□□□□ -0
CLN3-217ENST00000565354 TRIM64A6NGJ6 449 aa15.04■□□□□ -0
CLN3-217ENST00000565354 TRIM64BA6NI03 449 aa15.04■□□□□ -0
CLN3-217ENST00000565354 G3V2T6 193 aa15.04■□□□□ -0
CLN3-217ENST00000565354 ARPC3O15145 178 aa15.04■□□□□ -0
CLN3-217ENST00000565354 SIAH2O43255 324 aa15.04■□□□□ -0
CLN3-217ENST00000565354 IDH3BO43837 385 aa15.04■□□□□ -0
CLN3-217ENST00000565354 OR8G3PP0DMU2 310 aa15.04■□□□□ -0
CLN3-217ENST00000565354 POU1F1P28069 291 aa15.04■□□□□ -0
CLN3-217ENST00000565354 BSPH1Q075Z2 132 aa15.04■□□□□ -0
CLN3-217ENST00000565354 SGCAQ16586 387 aa15.04■□□□□ -0
CLN3-217ENST00000565354 SLC35F1Q5T1Q4 408 aa15.04■□□□□ -0
CLN3-217ENST00000565354 NCMAPQ5T1S8 102 aa15.04■□□□□ -0
CLN3-217ENST00000565354 LEG1Q6P5S2 330 aa15.04■□□□□ -0
CLN3-217ENST00000565354 DNM1P34Q6PK57 102 aa15.04■□□□□ -0
CLN3-217ENST00000565354 SLC25A47Q6Q0C1 308 aa15.04■□□□□ -0
CLN3-217ENST00000565354 ZDHHC13Q8IUH4 622 aa15.04■□□□□ -0
CLN3-217ENST00000565354 SVOPLQ8N434 492 aa15.04■□□□□ -0
CLN3-217ENST00000565354 SLC22A24Q8N4F4 322 aa15.04■□□□□ -0
CLN3-217ENST00000565354 ICA1LQ8NDH6 482 aa15.04■□□□□ -0
CLN3-217ENST00000565354 STMN2Q93045 179 aa15.04■□□□□ -0
CLN3-217ENST00000565354 PLA2G12AQ9BZM1 189 aa15.04■□□□□ -0
CLN3-217ENST00000565354 RNF121Q9H920 327 aa15.04■□□□□ -0
CLN3-217ENST00000565354 IL20Q9NYY1 176 aa15.04■□□□□ -0
CLN3-217ENST00000565354 NPAP1Q9NZP6 1156 aa15.04■□□□□ -0
CLN3-217ENST00000565354 BAIAP2Q9UQB8 552 aa15.04■□□□□ -0
CLN3-217ENST00000565354 RNF115Q9Y4L5 304 aa15.04■□□□□ -0
CLN3-217ENST00000565354 ERICH4A6NGS2 130 aa15.03■□□□□ -0
CLN3-217ENST00000565354 UBL3O95164 117 aa15.03■□□□□ -0
CLN3-217ENST00000565354 RAB36O95755 333 aa15.03■□□□□ -0
CLN3-217ENST00000565354 TXNDC12O95881 172 aa15.03■□□□□ -0
CLN3-217ENST00000565354 HIST1H1CP16403 213 aaKnown RBP15.03■□□□□ -0
CLN3-217ENST00000565354 NPR2P20594 1047 aa15.03■□□□□ -0
CLN3-217ENST00000565354 PTAFRP25105 342 aa15.03■□□□□ -0
CLN3-217ENST00000565354 CENPAP49450 140 aa15.03■□□□□ -0
CLN3-217ENST00000565354 ZNF133P52736 654 aaPredicted RBP15.03■□□□□ -0
CLN3-217ENST00000565354 NPRL3Q12980 569 aa15.03■□□□□ -0
CLN3-217ENST00000565354 GSG1Q2KHT4 349 aa15.03■□□□□ -0
CLN3-217ENST00000565354 SLC36A3Q495N2 470 aa15.03■□□□□ -0
CLN3-217ENST00000565354 CD300LDQ6UXZ3 194 aa15.03■□□□□ -0
CLN3-217ENST00000565354 SLC16A14Q7RTX9 510 aa15.03■□□□□ -0
CLN3-217ENST00000565354 DEPDC4Q8N2C3 294 aa15.03■□□□□ -0
CLN3-217ENST00000565354 PIAS4Q8N2W9 510 aaPredicted RBP15.03■□□□□ -0
CLN3-217ENST00000565354 OR2T33Q8NG76 320 aa15.03■□□□□ -0
CLN3-217ENST00000565354 OR4K13Q8NH42 304 aa15.03■□□□□ -0
CLN3-217ENST00000565354 DNAJC9Q8WXX5 260 aa15.03■□□□□ -0
CLN3-217ENST00000565354 CENPNQ96H22 339 aaPredicted RBP15.03■□□□□ -0
CLN3-217ENST00000565354 HS3ST6Q96QI5 342 aa15.03■□□□□ -0
CLN3-217ENST00000565354 SYT4Q9H2B2 425 aa15.03■□□□□ -0
CLN3-217ENST00000565354 IGKV1D-43A0A0B4J1Z2 117 aa15.02■□□□□ -0
CLN3-217ENST00000565354 DPRXA6NFQ7 191 aa15.02■□□□□ -0
CLN3-217ENST00000565354 ABCD4O14678 606 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms