RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 FZR1Q9UM11 496 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 ENPP4Q9Y6X5 453 aa12.75□□□□□ -0.37
CLN3-213ENST00000565047 MALRD1Q5VYJ5 2156 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 TRAV27A0A087WT01 109 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 LYNX1G3V0Z9 82 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 PTP4A3O75365 173 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 HPXP02790 462 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 SCG5P05408 212 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 LYNX1P0DP58 116 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 ZNF16P17020 682 aaPredicted RBP12.74□□□□□ -0.37
CLN3-213ENST00000565047 IL2RGP31785 369 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 LIMS1P48059 325 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 SLC9A3P48764 834 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 GZMKP49863 264 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 UCP2P55851 309 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 CTXN1P60606 82 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 ERVS71-1P61550 626 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 MAD2L1BPQ15013 274 aaPredicted RBP12.74□□□□□ -0.37
CLN3-213ENST00000565047 TMEM255AQ5JRV8 349 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 THEM4Q5T1C6 240 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 TMEM53Q6P2H8 277 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 FAM122BQ7Z309 247 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 OAFQ86UD1 273 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 FAM86B1Q8N7N1 296 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 OR13C2Q8NGS9 318 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 OR51A7Q8NH64 312 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 CMTM5Q96DZ9 223 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 DHRS1Q96LJ7 313 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 RACGAP1Q9H0H5 632 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 MS4A5Q9H3V2 200 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 C1orf198Q9H425 327 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 ANKRD19PQ9H560 264 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 DYNLRB1Q9NP97 96 aa12.74□□□□□ -0.37
CLN3-213ENST00000565047 DCAF13Q9NV06 445 aaKnown RBP12.74□□□□□ -0.37
CLN3-213ENST00000565047 COL6A5A8TX70 2615 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 LOC100509620A0A075B734 347 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 A0A1W2PRQ8 180 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 SLC22A23A1A5C7 686 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 LRP5LA4QPB2 252 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 EFCAB9A8MZ26 197 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 M0R233 179 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 NDUFAB1O14561 156 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 LMX1BO60663 402 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 ICMTO60725 284 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 NCR1O76036 304 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 CLPTM1O96005 669 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 SEMG1P04279 462 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 FAM157BP0CG42 384 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 ZNF32P17041 273 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 IGFBP5P24593 272 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 COL8A2P25067 703 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 APEX1P27695 318 aaKnown RBP12.73□□□□□ -0.37
CLN3-213ENST00000565047 IFNA8P32881 189 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 LSP1P33241 339 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 WNT5AP41221 380 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 FXYD6P3P58550 94 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 RPS23P62266 143 aaKnown RBP12.73□□□□□ -0.37
CLN3-213ENST00000565047 PSG4Q00888 419 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 GALK2Q01415 458 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 DGCR6Q14129 220 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 TRIP10Q15642 601 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 CHRFAM7AQ494W8 412 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 PABPC1L2AQ5JQF8 200 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 GKAP1Q5VSY0 366 aaPredicted RBP12.73□□□□□ -0.37
CLN3-213ENST00000565047 KCTD14Q9BQ13 255 aaPredicted RBP12.73□□□□□ -0.37
CLN3-213ENST00000565047 WNT5BQ9H1J7 359 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 GORASP2Q9H8Y8 452 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 RNF121Q9H920 327 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 EGFL7Q9UHF1 273 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 CDC42EP3Q9UKI2 254 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 MXRA5Q9NR99 2828 aa12.73□□□□□ -0.37
CLN3-213ENST00000565047 GSTA4O15217 222 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 RP2O75695 350 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 PTHP01270 115 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 FAM157CP0CG43 387 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 SAGP10523 405 aaPredicted RBP12.72□□□□□ -0.37
CLN3-213ENST00000565047 APEHP13798 732 aaKnown RBP12.72□□□□□ -0.37
CLN3-213ENST00000565047 TCN1P20061 433 aaPredicted RBP12.72□□□□□ -0.37
CLN3-213ENST00000565047 GPR4P46093 362 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 OMPP47874 163 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 MRPS11P82912 194 aaKnown RBP12.72□□□□□ -0.37
CLN3-213ENST00000565047 TOP3AQ13472 1001 aaPredicted RBP12.72□□□□□ -0.37
CLN3-213ENST00000565047 ENDOGQ14249 297 aaKnown RBP12.72□□□□□ -0.37
CLN3-213ENST00000565047 CARTPTQ16568 116 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 ZBED5Q49AG3 693 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 FAM205BPQ63HN1 556 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 GLYATQ6IB77 296 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 RGS7BPQ6MZT1 257 aaPredicted RBP12.72□□□□□ -0.37
CLN3-213ENST00000565047 PODNL1Q6PEZ8 512 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 ZNF730Q6ZMV8 503 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 FKBP9P1Q75LS8 142 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 CXXC5Q7LFL8 322 aaKnown RBP12.72□□□□□ -0.37
CLN3-213ENST00000565047 ZNF101Q8IZC7 436 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 FNDC8Q8TC99 324 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 NSMAFQ92636 917 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 YIPF5Q969M3 257 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 GPA33Q99795 319 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 ZNF416Q9BWM5 594 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 SPAG4Q9NPE6 437 aa12.72□□□□□ -0.37
CLN3-213ENST00000565047 CD300AQ9UGN4 299 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms