RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 ZNF571Q7Z3V5 609 aaPredicted RBP4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 AMIGO2Q86SJ2 522 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 ZNF554Q86TJ5 538 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 AKAP14Q86UN6 197 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 CRLF3Q8IUI8 442 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 CMTM1Q8IZ96 169 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 JAGN1Q8N5M9 183 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 MS4A15Q8N5U1 240 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 OR52H1Q8NGJ2 320 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 ITFG1Q8TB96 612 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 LGALS14Q8TCE9 139 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 Q8TCH9 128 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 FAM172AQ8WUF8 416 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 TM9SF4Q92544 642 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 ZNF641Q96N77 438 aaPredicted RBP4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 ZNF599Q96NL3 588 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 MCEEQ96PE7 176 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 KCNA7Q96RP8 456 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 CXCL16Q9H2A7 254 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 PIGUQ9H490 435 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 CUTCQ9NTM9 273 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 BFARQ9NZS9 450 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 C11orf21Q9P2W6 132 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 WARS2Q9UGM6 360 aaKnown RBP4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 KCNS2Q9ULS6 477 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 SLC17A4Q9Y2C5 497 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 AMDHD2Q9Y303 409 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 TESMINQ9Y4I5 508 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 V9GYY9 64 aa4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 MTCL1Q9Y4B5 1905 aaKnown RBP4.46□□□□□ -1.69
VPS35P1-201ENST00000563400 TRIP11Q15643 1979 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 A0A087X0T9 212 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 LOC101059948A0A1B0GTJ6 334 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 CENPXA8MT69 81 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 CENPBD1B2RD01 187 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 NEDD8-MDP1E9PL57 170 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 NDUFAB1O14561 156 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 PFDN6O15212 129 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 PROSCO94903 275 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 RPP14O95059 124 aaKnown RBP4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 LDOC1O95751 146 aaPredicted RBP4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 AP2A1O95782 977 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 ALDOBP05062 364 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 RHOCP08134 193 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 CTXN2P0C2S0 81 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 FAM228BP0C875 321 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 FAM157CP0CG43 387 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 ABOP16442 354 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 ZNF7P17097 686 aaPredicted RBP4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 CSKP41240 450 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 AVPR1BP47901 424 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 KRTAP10-2P60368 255 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 RPEL1Q2QD12 228 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 GTDC1Q4AE62 458 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 ACTBL2Q562R1 376 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 MS4A13Q5J8X5 152 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 SDHAF4Q5VUM1 108 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 ZNF793Q6ZN11 406 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 RNF113BQ8IZP6 322 aaKnown RBP4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 OR2L13Q8N349 312 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 KIR3DL3Q8N743 410 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 TPRX1Q8N7U7 411 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 LYPD6BQ8NI32 183 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 IL17DQ8TAD2 202 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 C8orf46Q8TAG6 207 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 GPR151Q8TDV0 419 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 TADA1Q96BN2 335 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 ZBTB9Q96C00 473 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 NTNG2Q96CW9 530 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 CXorf40BQ96DE9 158 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 RTP4Q96DX8 246 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 CCDC126Q96EE4 140 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 TXNDC15Q96J42 360 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 CLCC1Q96S66 551 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 CYP2S1Q96SQ9 504 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 TIMP4Q99727 224 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 ZNF670Q9BS34 389 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 FEM1AQ9BSK4 669 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 CALN1Q9BXU9 219 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 DGCR6LQ9BY27 220 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 KRTAP4-11Q9BYQ6 195 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 KRTAP3-1Q9BYR8 98 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 METTL8Q9H825 291 aaKnown RBP4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 FOLH1BQ9HBA9 442 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 FGF20Q9NP95 211 aaPredicted RBP4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 ASIC3Q9UHC3 531 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 AGO1Q9UL18 857 aaKnown RBP4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 EIF3LQ9Y262 564 aaKnown RBP4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 PLLPQ9Y342 182 aa4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 EXOSC1Q9Y3B2 195 aaKnown RBP4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 PRRC2BQ5JSZ5 2229 aaKnown RBP4.46□□□□□ -1.7
VPS35P1-201ENST00000563400 PDCD11Q14690 1871 aaKnown RBP4.45□□□□□ -1.7
VPS35P1-201ENST00000563400 SCN1AP35498 2009 aa4.45□□□□□ -1.7
VPS35P1-201ENST00000563400 A0A087WZ39 114 aa4.45□□□□□ -1.7
VPS35P1-201ENST00000563400 HACD1B0YJ81 288 aa4.45□□□□□ -1.7
VPS35P1-201ENST00000563400 E9PAM4 449 aa4.45□□□□□ -1.7
VPS35P1-201ENST00000563400 K7EN84 100 aa4.45□□□□□ -1.7
VPS35P1-201ENST00000563400 EI24O14681 340 aa4.45□□□□□ -1.7
VPS35P1-201ENST00000563400 PPIHO43447 177 aaKnown RBP4.45□□□□□ -1.7
VPS35P1-201ENST00000563400 TBL1XO60907 577 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms