RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 ABCD2Q9UBJ2 740 aa14.5□□□□□ -0.09
CLK3-210ENST00000563112 DUSP13Q9UII6 198 aa14.5□□□□□ -0.09
CLK3-210ENST00000563112 GPR160Q9UJ42 338 aa14.5□□□□□ -0.09
CLK3-210ENST00000563112 COL6A5A8TX70 2615 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 TRAV27A0A087WT01 109 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 A0A087WUU8 490 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 A0A1W2PPW3 197 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 A6NIZ1 184 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 IGHMP01871 453 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 FAM157BP0CG42 384 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 GIFP27352 417 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 APLNRP35414 380 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 RAD52P43351 418 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 RAP1BP61224 184 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 RAP1AP62834 184 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 GLYATQ6IB77 296 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 BCL2L14Q9BZR8 327 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 BPESC1Q9GZL8 116 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 TMEM160Q9NX00 188 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 ADA2Q9NZK5 511 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 CDC42EP3Q9UKI2 254 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 FZR1Q9UM11 496 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 ENPP4Q9Y6X5 453 aa14.49□□□□□ -0.09
CLK3-210ENST00000563112 ANK3Q12955 4377 aaKnown RBP14.49□□□□□ -0.09
CLK3-210ENST00000563112 IGHV4-61A0A0C4DH41 118 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 SNX3O60493 162 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 SNAP29O95721 258 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 LCKP06239 509 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 MMP7P09237 267 aaPredicted RBP14.48□□□□□ -0.09
CLK3-210ENST00000563112 CCL2P13500 99 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 ZNF16P17020 682 aaPredicted RBP14.48□□□□□ -0.09
CLK3-210ENST00000563112 ZNF23P17027 643 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 CDAP32320 146 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 RPL4P36578 427 aaKnown RBP14.48□□□□□ -0.09
CLK3-210ENST00000563112 ALDH3B1P43353 468 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 FMODQ06828 376 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 MSMPQ1L6U9 139 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 PABPC1L2AQ5JQF8 200 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 PODNL1Q6PEZ8 512 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 SLC25A47Q6Q0C1 308 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 IGFN1Q86VF2 1251 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 LRP11Q86VZ4 500 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 MEX3DQ86XN8 651 aaKnown RBP14.48□□□□□ -0.09
CLK3-210ENST00000563112 LRRC75AQ8NAA5 344 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 C11orf40Q8WZ69 217 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 NMD3Q96D46 503 aaKnown RBP14.48□□□□□ -0.09
CLK3-210ENST00000563112 BEX2Q9BXY8 128 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 NMNAT1Q9HAN9 279 aaPredicted RBP14.48□□□□□ -0.09
CLK3-210ENST00000563112 LPAR3Q9UBY5 353 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 EGFL7Q9UHF1 273 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 SAMD4AQ9UPU9 718 aaKnown RBP14.48□□□□□ -0.09
CLK3-210ENST00000563112 TMEM5Q9Y2B1 443 aa14.48□□□□□ -0.09
CLK3-210ENST00000563112 LOC100289279A0A1B0GTE1 492 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 RRP9O43818 475 aaKnown RBP14.47□□□□□ -0.09
CLK3-210ENST00000563112 LMX1BO60663 402 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 PRSS23O95084 383 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 H1F0P07305 194 aaKnown RBP14.47□□□□□ -0.09
CLK3-210ENST00000563112 IGFBP1P08833 259 aaPredicted RBP14.47□□□□□ -0.09
CLK3-210ENST00000563112 DRD4P21917 467 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 FUT4P22083 530 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 CHN2P52757 468 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 UCP2P55851 309 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 MOGQ16653 247 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 NKPD1Q17RQ9 610 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 ZBED5Q49AG3 693 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 FAM27BQ5VT28 67 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 FAM166AQ6J272 317 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 TBPL2Q6SJ96 375 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 UNQ6126/PRO20091Q6UXV3 157 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 TMPRSS11FQ6ZWK6 438 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 ALDH16A1Q8IZ83 802 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 ARIH2OSQ8N7S6 290 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 OR13C2Q8NGS9 318 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 ZNF519Q8TB69 540 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 SYNPRQ8TBG9 265 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 SNX33Q8WV41 574 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 TSPAN32Q96QS1 320 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 OR51B6Q9H340 312 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 EIF3KQ9UBQ5 218 aaKnown RBP14.47□□□□□ -0.09
CLK3-210ENST00000563112 GRHPRQ9UBQ7 328 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 KCNS2Q9ULS6 477 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 UGT2A1Q9Y4X1 527 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 MXRA5Q9NR99 2828 aa14.47□□□□□ -0.09
CLK3-210ENST00000563112 IGKV1D-43A0A0B4J1Z2 117 aa14.46□□□□□ -0.09
CLK3-210ENST00000563112 XKRYO14609 159 aa14.46□□□□□ -0.09
CLK3-210ENST00000563112 ZNF32P17041 273 aa14.46□□□□□ -0.09
CLK3-210ENST00000563112 RHCEP18577 417 aa14.46□□□□□ -0.09
CLK3-210ENST00000563112 TCN1P20061 433 aaPredicted RBP14.46□□□□□ -0.09
CLK3-210ENST00000563112 CCNOP22674 350 aa14.46□□□□□ -0.09
CLK3-210ENST00000563112 STOMP27105 288 aa14.46□□□□□ -0.09
CLK3-210ENST00000563112 APEX1P27695 318 aaKnown RBP14.46□□□□□ -0.09
CLK3-210ENST00000563112 GPR4P46093 362 aa14.46□□□□□ -0.09
CLK3-210ENST00000563112 KLF3P57682 345 aaPredicted RBP14.46□□□□□ -0.09
CLK3-210ENST00000563112 PCBD1P61457 104 aa14.46□□□□□ -0.09
CLK3-210ENST00000563112 ERVK-25P63136 954 aa14.46□□□□□ -0.09
CLK3-210ENST00000563112 KRT72Q14CN4 511 aa14.46□□□□□ -0.09
CLK3-210ENST00000563112 MAD2L1BPQ15013 274 aaPredicted RBP14.46□□□□□ -0.09
CLK3-210ENST00000563112 PAQR4Q8N4S7 273 aaPredicted RBP14.46□□□□□ -0.09
CLK3-210ENST00000563112 ICA1LQ8NDH6 482 aa14.46□□□□□ -0.09
CLK3-210ENST00000563112 NABP1Q96AH0 204 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms