RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 BEX5Q5H9J7 111 aa8.83□□□□□ -1
USP3-216ENST00000559873 SLX4IPQ5VYV7 408 aa8.83□□□□□ -1
USP3-216ENST00000559873 FBXW10Q5XX13 1052 aa8.83□□□□□ -1
USP3-216ENST00000559873 ALKBH2Q6NS38 261 aa8.83□□□□□ -1
USP3-216ENST00000559873 TMEM53Q6P2H8 277 aa8.83□□□□□ -1
USP3-216ENST00000559873 SLC25A47Q6Q0C1 308 aa8.83□□□□□ -1
USP3-216ENST00000559873 PTCHD4Q6ZW05 846 aa8.83□□□□□ -1
USP3-216ENST00000559873 SLC16A14Q7RTX9 510 aa8.83□□□□□ -1
USP3-216ENST00000559873 WDFY1Q8IWB7 410 aa8.83□□□□□ -1
USP3-216ENST00000559873 SLC22A24Q8N4F4 322 aa8.83□□□□□ -1
USP3-216ENST00000559873 SLC37A3Q8NCC5 494 aa8.83□□□□□ -1
USP3-216ENST00000559873 PROKR2Q8NFJ6 384 aa8.83□□□□□ -1
USP3-216ENST00000559873 OR10H5Q8NGA6 315 aa8.83□□□□□ -1
USP3-216ENST00000559873 OR52N5Q8NH56 324 aa8.83□□□□□ -1
USP3-216ENST00000559873 LINC01560Q8TB33 94 aa8.83□□□□□ -1
USP3-216ENST00000559873 BCL2L2Q92843 193 aaPredicted RBP8.83□□□□□ -1
USP3-216ENST00000559873 WFIKKN1Q96NZ8 548 aa8.83□□□□□ -1
USP3-216ENST00000559873 WACQ9BTA9 647 aa8.83□□□□□ -1
USP3-216ENST00000559873 NUAK2Q9H093 628 aa8.83□□□□□ -1
USP3-216ENST00000559873 C1orf198Q9H425 327 aa8.83□□□□□ -1
USP3-216ENST00000559873 FN3KQ9H479 309 aa8.83□□□□□ -1
USP3-216ENST00000559873 ESRP2Q9H6T0 727 aaKnown RBP8.83□□□□□ -1
USP3-216ENST00000559873 SMPD3Q9NY59 655 aaPredicted RBP8.83□□□□□ -1
USP3-216ENST00000559873 TMEFF2Q9UIK5 374 aaPredicted RBP8.83□□□□□ -1
USP3-216ENST00000559873 POLR1DQ9Y2S0 133 aa8.83□□□□□ -1
USP3-216ENST00000559873 ZAR1LA6NP61 321 aa8.82□□□□□ -1
USP3-216ENST00000559873 C12orf71A8MTZ7 269 aa8.82□□□□□ -1
USP3-216ENST00000559873 PRR23D1E9PI22 279 aaPredicted RBP8.82□□□□□ -1
USP3-216ENST00000559873 CASQ2O14958 399 aaPredicted RBP8.82□□□□□ -1
USP3-216ENST00000559873 SURF4O15260 269 aa8.82□□□□□ -1
USP3-216ENST00000559873 PRODHO43272 600 aa8.82□□□□□ -1
USP3-216ENST00000559873 PRR23D2P0DMB1 279 aaPredicted RBP8.82□□□□□ -1
USP3-216ENST00000559873 LAP3P28838 519 aa8.82□□□□□ -1
USP3-216ENST00000559873 PTDSS1P48651 473 aaKnown RBP8.82□□□□□ -1
USP3-216ENST00000559873 SLC25A1P53007 311 aa8.82□□□□□ -1
USP3-216ENST00000559873 CDK5Q00535 292 aa8.82□□□□□ -1
USP3-216ENST00000559873 SCRN3Q0VDG4 424 aa8.82□□□□□ -1
USP3-216ENST00000559873 RIPK1Q13546 671 aa8.82□□□□□ -1
USP3-216ENST00000559873 SGCAQ16586 387 aa8.82□□□□□ -1
USP3-216ENST00000559873 LCN1P1Q5VSP4 162 aa8.82□□□□□ -1
USP3-216ENST00000559873 TMEM108Q6UXF1 575 aa8.82□□□□□ -1
USP3-216ENST00000559873 FOXL2NBQ6ZUU3 175 aa8.82□□□□□ -1
USP3-216ENST00000559873 ZBTB46Q86UZ6 589 aa8.82□□□□□ -1
USP3-216ENST00000559873 FAM169BQ8N8A8 192 aa8.82□□□□□ -1
USP3-216ENST00000559873 NPEPL1Q8NDH3 523 aa8.82□□□□□ -1
USP3-216ENST00000559873 ZNF555Q8NEP9 628 aa8.82□□□□□ -1
USP3-216ENST00000559873 OTULINQ96BN8 352 aa8.82□□□□□ -1
USP3-216ENST00000559873 ZNF837Q96EG3 531 aaPredicted RBP8.82□□□□□ -1
USP3-216ENST00000559873 KCNS3Q9BQ31 491 aa8.82□□□□□ -1
USP3-216ENST00000559873 CCNB1IP1Q9NPC3 277 aa8.82□□□□□ -1
USP3-216ENST00000559873 POLE4Q9NR33 117 aa8.82□□□□□ -1
USP3-216ENST00000559873 IMPAD1Q9NX62 359 aa8.82□□□□□ -1
USP3-216ENST00000559873 TVP23BQ9NYZ1 205 aa8.82□□□□□ -1
USP3-216ENST00000559873 MOKQ9UQ07 419 aa8.82□□□□□ -1
USP3-216ENST00000559873 RRP15Q9Y3B9 282 aaKnown RBP8.82□□□□□ -1
USP3-216ENST00000559873 UGT2A1Q9Y4X1 527 aa8.82□□□□□ -1
USP3-216ENST00000559873 SLC25A15Q9Y619 301 aa8.82□□□□□ -1
USP3-216ENST00000559873 IGLV1-36A0A0B4J1U3 117 aa8.81□□□□□ -1
USP3-216ENST00000559873 IGKV1D-43A0A0B4J1Z2 117 aa8.81□□□□□ -1
USP3-216ENST00000559873 OR6C68A6NDL8 312 aa8.81□□□□□ -1
USP3-216ENST00000559873 A6NNC1 897 aa8.81□□□□□ -1
USP3-216ENST00000559873 PTHP01270 115 aa8.81□□□□□ -1
USP3-216ENST00000559873 HLA-DQA2P01906 255 aa8.81□□□□□ -1
USP3-216ENST00000559873 HRGP04196 525 aa8.81□□□□□ -1
USP3-216ENST00000559873 THBDP07204 575 aa8.81□□□□□ -1
USP3-216ENST00000559873 CST2P09228 141 aa8.81□□□□□ -1
USP3-216ENST00000559873 CD79AP11912 226 aa8.81□□□□□ -1
USP3-216ENST00000559873 ZNF823P16415 610 aa8.81□□□□□ -1
USP3-216ENST00000559873 SPI1P17947 270 aa8.81□□□□□ -1
USP3-216ENST00000559873 PTAFRP25105 342 aa8.81□□□□□ -1
USP3-216ENST00000559873 SSTR2P30874 369 aa8.81□□□□□ -1
USP3-216ENST00000559873 LSM6P62312 80 aaKnown RBP8.81□□□□□ -1
USP3-216ENST00000559873 HSF2Q03933 536 aa8.81□□□□□ -1
USP3-216ENST00000559873 PLP2Q04941 152 aa8.81□□□□□ -1
USP3-216ENST00000559873 AQP6Q13520 282 aa8.81□□□□□ -1
USP3-216ENST00000559873 SNTB1Q13884 538 aaKnown RBP8.81□□□□□ -1
USP3-216ENST00000559873 DAZAP2Q15038 168 aaPredicted RBP8.81□□□□□ -1
USP3-216ENST00000559873 LRRC36Q1X8D7 754 aa8.81□□□□□ -1
USP3-216ENST00000559873 C3orf36Q3SXR2 165 aa8.81□□□□□ -1
USP3-216ENST00000559873 OGFRL1Q5TC84 451 aaPredicted RBP8.81□□□□□ -1
USP3-216ENST00000559873 FAM27BQ5VT28 67 aa8.81□□□□□ -1
USP3-216ENST00000559873 C12orf73Q69YU5 71 aa8.81□□□□□ -1
USP3-216ENST00000559873 ACSM5Q6NUN0 579 aa8.81□□□□□ -1
USP3-216ENST00000559873 CXXC5Q7LFL8 322 aaKnown RBP8.81□□□□□ -1
USP3-216ENST00000559873 SYT9Q86SS6 491 aa8.81□□□□□ -1
USP3-216ENST00000559873 OR6V1Q8N148 313 aa8.81□□□□□ -1
USP3-216ENST00000559873 DEPDC4Q8N2C3 294 aa8.81□□□□□ -1
USP3-216ENST00000559873 CYB561A3Q8NBI2 242 aa8.81□□□□□ -1
USP3-216ENST00000559873 OR9Q1Q8NGQ5 310 aa8.81□□□□□ -1
USP3-216ENST00000559873 OR6K6Q8NGW6 343 aa8.81□□□□□ -1
USP3-216ENST00000559873 MARVELD3Q96A59 401 aa8.81□□□□□ -1
USP3-216ENST00000559873 C14orf79Q96F83 325 aa8.81□□□□□ -1
USP3-216ENST00000559873 RNF121Q9H920 327 aa8.81□□□□□ -1
USP3-216ENST00000559873 SRA1Q9HD15 236 aaKnown RBP8.81□□□□□ -1
USP3-216ENST00000559873 H2AFY2Q9P0M6 372 aaPredicted RBP8.81□□□□□ -1
USP3-216ENST00000559873 KCNG2Q9UJ96 466 aa8.81□□□□□ -1
USP3-216ENST00000559873 B9D1Q9UPM9 204 aa8.81□□□□□ -1
USP3-216ENST00000559873 COA3Q9Y2R0 106 aaPredicted RBP8.81□□□□□ -1
USP3-216ENST00000559873 FLNBO75369 2602 aaKnown RBP8.8□□□□□ -1
USP3-216ENST00000559873 IQCMA0A1B0GVH7 501 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 169.2 ms