RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PTCHD4Q6ZW05 846 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 SLC16A14Q7RTX9 510 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 YTHDF3Q7Z739 585 aaKnown RBP11.83□□□□□ -0.52
SHMT2-228ENST00000557302 HS3ST5Q8IZT8 346 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 LILRB1Q8NHL6 650 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-228ENST00000557302 HTRA1Q92743 480 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 NEUROG1Q92886 237 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 NINJ1Q92982 152 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 FBXW5Q969U6 566 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 NRBF2Q96F24 287 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 RAB3IPQ96QF0 476 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-228ENST00000557302 SH3GL3Q99963 347 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 NIPSNAP1Q9BPW8 284 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 PLA2G12AQ9BZM1 189 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 SYT4Q9H2B2 425 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 SEC61A2Q9H9S3 476 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 ZNF556Q9HAH1 456 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 SIAEQ9HAT2 523 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 NTN4Q9HB63 628 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 NOX3Q9HBY0 568 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 TBC1D23Q9NUY8 699 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 ZNF224Q9NZL3 707 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 VSX1Q9NZR4 365 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-228ENST00000557302 FBXL3Q9UKT7 428 aa11.83□□□□□ -0.52
SHMT2-228ENST00000557302 A0A1W2PPL8 197 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 ATP6V1G2-DDX39BF2Z307 99 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 KHDRBS3O75525 346 aaKnown RBP11.82□□□□□ -0.52
SHMT2-228ENST00000557302 ATE1O95260 518 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 SOX14O95416 240 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 RENP00797 406 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 CRYAAP02489 173 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 CELA3BP08861 270 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 PATE4P0C8F1 98 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 ANXA8P13928 327 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 HIST1H1CP16403 213 aaKnown RBP11.82□□□□□ -0.52
SHMT2-228ENST00000557302 CTLA4P16410 223 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 CDKN2AP42771 156 aaKnown RBP11.82□□□□□ -0.52
SHMT2-228ENST00000557302 PTDSS1P48651 473 aaKnown RBP11.82□□□□□ -0.52
SHMT2-228ENST00000557302 RAB1AP62820 205 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 KPNB1Q14974 876 aaKnown RBP11.82□□□□□ -0.52
SHMT2-228ENST00000557302 SGCAQ16586 387 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 TMEM53Q6P2H8 277 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 LEG1Q6P5S2 330 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 SHQ1Q6PI26 577 aaKnown RBP11.82□□□□□ -0.52
SHMT2-228ENST00000557302 FOXL2NBQ6ZUU3 175 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 LRRC18Q8N456 261 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 ZNF611Q8N823 705 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 OR8D4Q8NGM9 314 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 OR4K13Q8NH42 304 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 NABP1Q96AH0 204 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 SNX18Q96RF0 628 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 BDH2Q9BUT1 245 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 TSSK6Q9BXA6 273 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 KCNN2Q9H2S1 579 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 RERGLQ9H628 205 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 RNF121Q9H920 327 aa11.82□□□□□ -0.52
SHMT2-228ENST00000557302 AKAP9Q99996 3911 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 BHLHE40O14503 412 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 RRP9O43818 475 aaKnown RBP11.81□□□□□ -0.52
SHMT2-228ENST00000557302 SLC16A7O60669 478 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 IGFBP1P08833 259 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-228ENST00000557302 MSR1P21757 451 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 PRKACGP22612 351 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 CRABP1P29762 137 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 NAAAQ02083 359 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 SLC36A3Q495N2 470 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 DNM1P34Q6PK57 102 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 MYPOPQ86VE0 399 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-228ENST00000557302 LNX2Q8N448 690 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 ATG16L2Q8NAA4 619 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 IL17RDQ8NFM7 739 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 OR2T33Q8NG76 320 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 OR5K1Q8NHB7 308 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 FGFBP3Q8TAT2 258 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 TEX47Q8TBZ9 253 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 PYDC1Q8WXC3 89 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 NMNAT3Q96T66 252 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 CCL19Q99731 98 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 NUAK2Q9H093 628 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 CISD1Q9NZ45 108 aaKnown RBP11.81□□□□□ -0.52
SHMT2-228ENST00000557302 KIF17Q9P2E2 1029 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 MOKQ9UQ07 419 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 BAIAP2Q9UQB8 552 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 ATP23Q9Y6H3 246 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 PLCE1Q9P212 2302 aa11.81□□□□□ -0.52
SHMT2-228ENST00000557302 H3BN98 237 aa11.8□□□□□ -0.52
SHMT2-228ENST00000557302 TP53P04637 393 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-228ENST00000557302 CST2P09228 141 aa11.8□□□□□ -0.52
SHMT2-228ENST00000557302 ZNF14P17017 642 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-228ENST00000557302 CD53P19397 219 aa11.8□□□□□ -0.52
SHMT2-228ENST00000557302 LAP3P28838 519 aa11.8□□□□□ -0.52
SHMT2-228ENST00000557302 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.8□□□□□ -0.52
SHMT2-228ENST00000557302 RAB39AQ14964 217 aa11.8□□□□□ -0.52
SHMT2-228ENST00000557302 ETFDHQ16134 617 aa11.8□□□□□ -0.52
SHMT2-228ENST00000557302 SLC35F1Q5T1Q4 408 aa11.8□□□□□ -0.52
SHMT2-228ENST00000557302 FAM27BQ5VT28 67 aa11.8□□□□□ -0.52
SHMT2-228ENST00000557302 ZFP1Q6P2D0 407 aa11.8□□□□□ -0.52
SHMT2-228ENST00000557302 B3GLCTQ6Y288 498 aa11.8□□□□□ -0.52
SHMT2-228ENST00000557302 HIPK1Q86Z02 1210 aa11.8□□□□□ -0.52
SHMT2-228ENST00000557302 GLB1L2Q8IW92 636 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms