RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	OR52W1	Q6IF63	320 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	DND1	Q8IYX4	353 aa	Known RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	IL17RC	Q8NAC3	791 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	NECAP1	Q8NC96	275 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR1S1	Q8NH92	325 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	HPSE2	Q8WWQ2	592 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	RAB3C	Q96E17	227 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	HHIP	Q96QV1	700 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	TINAGL1	Q9GZM7	467 aa	Predicted RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	NXF5	Q9H1B4	397 aa	Known RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	FKRP	Q9H9S5	495 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF160	Q9HCG1	818 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR52A1	Q9UKL2	312 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	FAM96B	Q9Y3D0	163 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	BRWD3	Q6RI45	1802 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	SCN1A	P35498	2009 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	C17orf113	A0A1B0GUU1	675 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005		A0A1W2PS29	197 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	MED19	A0JLT2	244 aa	Predicted RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	RFPL4A	A6NLU0	287 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	RFPL4AL1	F8VTS6	287 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	CYB5B	O43169	146 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	HSPA12A	O43301	675 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	TRAPPC6A	O75865	159 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	BPNT1	O95861	308 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	IFNA1	P01562	189 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	LIMS3	P0CW19	117 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	LIMS4	P0CW20	117 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	RPS2	P15880	293 aa	Known RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	AFF3	P51826	1226 aa	Known RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR2B8P	P59922	312 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	C11orf87	Q6NUJ2	197 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM184A	Q6ZMB5	413 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	ACOT7L	Q6ZUV0	252 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	ADIPOR2	Q86V24	386 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	CBLN2	Q8IUK8	224 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	RXFP4	Q8TDU9	374 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	FBXO17	Q96EF6	278 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF75A	Q96N20	296 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	SDF2	Q99470	211 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	GAS2L1	Q99501	681 aa	Predicted RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	GPA33	Q99795	319 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR10A5	Q9H207	317 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	TCEAL2	Q9H3H9	227 aa	Predicted RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	SPACA1	Q9HBV2	294 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	SIRT3	Q9NTG7	399 aa	Predicted RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZFP57	Q9NU63	452 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC23A2	Q9UGH3	650 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	COA3	Q9Y2R0	106 aa	Predicted RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	PDCD11	Q14690	1871 aa	Known RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005		A0A1W2PPH5	198 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	ANKRD20A5P	A0PJZ0	165 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005		A6NIZ1	184 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	UMAD1	C9J7I0	102 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	CDK2AP1	O14519	115 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	GSTZ1	O43708	216 aa	Predicted RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	GPRIN2	O60269	458 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	RRAS	P10301	218 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	RAP1B	P61224	184 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	HSD11B2	P80365	405 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	GLO1	Q04760	184 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	PDSS1	Q5T2R2	415 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	PRAMEF8	Q5VWM4	474 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	PRAMEF7	Q5VXH5	474 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	GLIPR1L1	Q6UWM5	242 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	MRPL41	Q8IXM3	137 aa	Known RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	SPIC	Q8N5J4	248 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	TERB2	Q8NHR7	220 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	TIMM29	Q9BSF4	260 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF304	Q9HCX3	659 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	FLVCR1	Q9Y5Y0	555 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	MBTPS2	O43462	519 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	F12	P00748	615 aa	Predicted RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	SULT1A3	P0DMM9	295 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	SULT1A4	P0DMN0	295 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	PI3	P19957	117 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	POU3F2	P20265	443 aa	Predicted RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	SFTPD	P35247	375 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	MEOX2	P50222	304 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	POLR2H	P52434	150 aa	Known RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	HNF4G	Q14541	408 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	ELFN2	Q5R3F8	820 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	PLCXD3	Q63HM9	321 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	FBXW12	Q6X9E4	464 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF793	Q6ZN11	406 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005		Q6ZSR6	202 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	HIST2H3A	Q71DI3	136 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM151B	Q8IW70	566 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	KLHDC8B	Q8IXV7	354 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	CA13	Q8N1Q1	262 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	EID2	Q8N6I1	236 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM217	Q8N7C4	229 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR4D10	Q8NGI6	311 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	MALSU1	Q96EH3	234 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	LYSMD1	Q96S90	227 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	LMF2	Q9BU23	707 aa	Known RBP	4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	NTM	Q9P121	344 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	LUZP4	Q9P127	313 aa		4.55	□□□□□ -1.68
SYNE2-223	ENST00000557005	KCNG2	Q9UJ96	466 aa		4.55	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms