RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ARIH2OSQ8N7S6 290 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 RBM15BQ8NDT2 890 aaKnown RBP13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 OR1J2Q8NGS2 313 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 OR51A7Q8NH64 312 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 PYURFQ96I23 114 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 TSPAN32Q96QS1 320 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 ARL8BQ9NVJ2 186 aa13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 ZNF346Q9UL40 294 aaKnown RBP13.82□□□□□ -0.2
CCDC88C-209ENST00000554872 IGKV1D-43A0A0B4J1Z2 117 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 INAFM1C9JVW0 142 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 GPRIN2O60269 458 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 ICMTO60725 284 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 TP53P04637 393 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 PATE4P0C8F1 98 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 ZNF26P17031 533 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 GIFP27352 417 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 NR4A2P43354 598 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 OMPP47874 163 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 SMIM11AP58511 58 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 MYBPC1Q00872 1141 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 TBC1D28Q2M2D7 210 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 TMEM249Q2WGJ8 235 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 PODNL1Q6PEZ8 512 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 TBPL2Q6SJ96 375 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 MAPK1IP1LQ8NDC0 245 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 ZNF540Q8NDQ6 660 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 HTRA1Q92743 480 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 RBP7Q96R05 134 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 PIMREGQ9BSJ6 248 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 MRPL37Q9BZE1 423 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 MS4A5Q9H3V2 200 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 KRCC1Q9NPI7 259 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 SIGLEC7Q9Y286 467 aa13.81□□□□□ -0.2
CCDC88C-209ENST00000554872 IGLV3-9A0A075B6K5 115 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 IQCMA0A1B0GVH7 501 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 M0R233 179 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 DYNC1I1O14576 645 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 ARPC2O15144 300 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 PTP4A3O75365 173 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 CRLF1O75462 422 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 LY6HO94772 140 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 CST2P09228 141 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 APEHP13798 732 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 USF1P22415 310 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 GPR4P46093 362 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 PLP2Q04941 152 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 FMODQ06828 376 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 TOP3AQ13472 1001 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 GKAP1Q5VSY0 366 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 GPR139Q6DWJ6 353 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 SYT9Q86SS6 491 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 C1orf174Q8IYL3 243 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 ARHGAP24Q8N264 748 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 RNF148Q8N7C7 305 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 VRK1Q99986 396 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 BCL2L14Q9BZR8 327 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 LRMDAQ9H2I8 198 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 KCNN2Q9H2S1 579 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 DYNLRB1Q9NP97 96 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 NRIP3Q9NQ35 241 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 TMEM160Q9NX00 188 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 JMJD1CQ15652 2540 aa13.8□□□□□ -0.2
CCDC88C-209ENST00000554872 SONP18583 2426 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 NDUFB2O95178 105 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 ZNF250P15622 560 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 SDHAP31040 664 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 PCBD1P61457 104 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 FGD3Q5JSP0 725 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 C6orf52Q5T4I8 152 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 IGFN1Q86VF2 1251 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 ZNF786Q8N393 782 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 PAQR4Q8N4S7 273 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 FAM46AQ96IP4 442 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 NSMCE2Q96MF7 247 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 CCT8L2Q96SF2 557 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 CDRT15Q96T59 188 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 RNF121Q9H920 327 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 CDH20Q9HBT6 801 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 IL1RAPQ9NPH3 570 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 GRHPRQ9UBQ7 328 aa13.79□□□□□ -0.2
CCDC88C-209ENST00000554872 TRBV4-1A0A0J9YWV2 114 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 SH3PXD2BA1X283 911 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 PRSS37A4D1T9 235 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 H3BSA7 217 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 TXNDC12O95881 172 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 FAM107AO95990 144 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 DAOP14920 347 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 ZNF32P17041 273 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 MSR1P21757 451 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 CDAP32320 146 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 RPL4P36578 427 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 GUCA1AP43080 201 aaPredicted RBP13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 RAD52P43351 418 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 MRPS11P82912 194 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 SEC23BQ15437 767 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 MESTQ5EB52 335 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 MTX3Q5HYI7 312 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 PABPC1L2AQ5JQF8 200 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 ADCK1Q86TW2 530 aa13.78□□□□□ -0.2
CCDC88C-209ENST00000554872 MEX3DQ86XN8 651 aaKnown RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms