RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 FOXN4Q96NZ1 517 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 DENND2DQ9H6A0 471 aaPredicted RBP12.28□□□□□ -0.44
PTCH1-226ENST00000553011 TBC1D23Q9NUY8 699 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 IL20Q9NYY1 176 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 VSX1Q9NZR4 365 aaPredicted RBP12.28□□□□□ -0.44
PTCH1-226ENST00000553011 ITPR3Q14573 2671 aa12.28□□□□□ -0.44
PTCH1-226ENST00000553011 OTOGQ6ZRI0 2925 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 A0A1W2PPL8 197 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 BHLHE40O14503 412 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 AHCYL1O43865 530 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 UBL3O95164 117 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 ATE1O95260 518 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 CD53P19397 219 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 PAX7P23759 505 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 NOS3P29474 1203 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 ARR3P36575 388 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 PTDSS1P48651 473 aaKnown RBP12.27□□□□□ -0.45
PTCH1-226ENST00000553011 ACTR3P61158 418 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 RAB1AP62820 205 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 NAAAQ02083 359 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 DBPQ10586 325 aaPredicted RBP12.27□□□□□ -0.45
PTCH1-226ENST00000553011 KEAP1Q14145 624 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 RPL13AP3Q6NVV1 102 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 LEG1Q6P5S2 330 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 SHQ1Q6PI26 577 aaKnown RBP12.27□□□□□ -0.45
PTCH1-226ENST00000553011 CD300LDQ6UXZ3 194 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 B3GLCTQ6Y288 498 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 SLC16A14Q7RTX9 510 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 AMIGO2Q86SJ2 522 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 JAZF1Q86VZ6 243 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 FAM169BQ8N8A8 192 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 OR4Q3Q8NH05 313 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 LRTOMTQ8WZ04 291 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 MS4A3Q96HJ5 214 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 RADILQ96JH8 1075 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 TSSK2Q96PF2 358 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 NMNAT3Q96T66 252 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 TSSK6Q9BXA6 273 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 RERGLQ9H628 205 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 SIAEQ9HAT2 523 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 REV1Q9UBZ9 1251 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 POU2F3Q9UKI9 436 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 MOKQ9UQ07 419 aa12.27□□□□□ -0.45
PTCH1-226ENST00000553011 E7EQL1 145 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 SLC16A7O60669 478 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 ENTPD5O75356 428 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 RAB36O95755 333 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 SCG5P05408 212 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 DNASE1P24855 282 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 FASP25445 335 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 CALCRP30988 508 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 RAB39AQ14964 217 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 C3orf36Q3SXR2 165 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 SLC36A3Q495N2 470 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 NRN1LQ496H8 165 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 C20orf204Q6ZNR8 217 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 FOXL2NBQ6ZUU3 175 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 YTHDF3Q7Z739 585 aaKnown RBP12.26□□□□□ -0.45
PTCH1-226ENST00000553011 ZNF611Q8N823 705 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 SDR9C7Q8NEX9 313 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 OR5K1Q8NHB7 308 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 PYDC1Q8WXC3 89 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 NINJ1Q92982 152 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 FBXW5Q969U6 566 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 NUAK2Q9H093 628 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 FN3KQ9H479 309 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 MOV10Q9HCE1 1003 aaKnown RBP12.26□□□□□ -0.45
PTCH1-226ENST00000553011 CISD1Q9NZ45 108 aaKnown RBP12.26□□□□□ -0.45
PTCH1-226ENST00000553011 ITGB1BP2Q9UKP3 347 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 ATP23Q9Y6H3 246 aa12.26□□□□□ -0.45
PTCH1-226ENST00000553011 IGHV2OR16-5A0A0B4J2B6 119 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 DCTN6O00399 190 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 IDH3BO43837 385 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 KHDRBS3O75525 346 aaKnown RBP12.25□□□□□ -0.45
PTCH1-226ENST00000553011 MMP7P09237 267 aaPredicted RBP12.25□□□□□ -0.45
PTCH1-226ENST00000553011 FCGR1AP12314 374 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 ANXA8P13928 327 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 ZNF14P17017 642 aaPredicted RBP12.25□□□□□ -0.45
PTCH1-226ENST00000553011 NPR2P20594 1047 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 LAP3P28838 519 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 ARHGDIAP52565 204 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.25□□□□□ -0.45
PTCH1-226ENST00000553011 COX10Q12887 443 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 SLC36A2Q495M3 483 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 FAM27BQ5VT28 67 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 OTPQ5XKR4 325 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 TMEM53Q6P2H8 277 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 DEPDC4Q8N2C3 294 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 LNX2Q8N448 690 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 IQCF1Q8N6M8 205 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 ATG16L2Q8NAA4 619 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 CYB561A3Q8NBI2 242 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 OR52E2Q8NGJ4 325 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 FBXO17Q96EF6 278 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 NRBF2Q96F24 287 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 CCL19Q99731 98 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 KCNS3Q9BQ31 491 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 RNF121Q9H920 327 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 ZNF556Q9HAH1 456 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 EMC7Q9NPA0 242 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms