RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 EXPH5Q8NEV8 1989 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 COL5A1P20908 1838 aaPredicted RBP9.93□□□□□ -0.82
CUX1-212ENST00000547394 TNRC6BQ9UPQ9 1833 aaKnown RBP9.93□□□□□ -0.82
CUX1-212ENST00000547394 LNP1A1A4G5 178 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 A6NL46 340 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 IFITM5A6NNB3 132 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 NTN3O00634 580 aaPredicted RBP9.93□□□□□ -0.82
CUX1-212ENST00000547394 TACSTD2P09758 323 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 PRKAR1AP10644 381 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 COX6A1P12074 109 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 MPLP40238 635 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 CCDC58Q4VC31 144 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 EMC4Q5J8M3 183 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 OR6F1Q8NGZ6 308 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 ACOT12Q8WYK0 555 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 TRIM63Q969Q1 353 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 SLC25A38Q96DW6 304 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 RBFOX1Q9NWB1 397 aaKnown RBP9.93□□□□□ -0.82
CUX1-212ENST00000547394 NKIRAS2Q9NYR9 191 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 LRP12Q9Y561 859 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 ALG5Q9Y673 324 aa9.93□□□□□ -0.82
CUX1-212ENST00000547394 CHCHD2Q9Y6H1 151 aaPredicted RBP9.93□□□□□ -0.82
CUX1-212ENST00000547394 GVINP1Q7Z2Y8 2422 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 IGHV1-45A0A0A0MS14 117 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 TRAV1-2A0A0B4J238 106 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 MEIS3P1A6NDR6 274 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 LIPT2A6NK58 231 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 SLC2A1P11166 492 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 ZFP36L1Q07352 338 aaKnown RBP9.92□□□□□ -0.82
CUX1-212ENST00000547394 SF3B4Q15427 424 aaKnown RBP eCLIP9.92□□□□□ -0.825e-6■■■■□ 20.8
CUX1-212ENST00000547394 SF3A2Q15428 464 aaKnown RBP9.92□□□□□ -0.82
CUX1-212ENST00000547394 BCL2A1Q16548 175 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 Q499Y3 187 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 NDUFAF7Q7L592 441 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 SIAH3Q8IW03 269 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 OR11G2Q8NGC1 345 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 ASB10Q8WXI3 467 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 SERINC1Q9NRX5 453 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 MRPL39Q9NYK5 338 aaKnown RBP9.92□□□□□ -0.82
CUX1-212ENST00000547394 B3GAT1Q9P2W7 334 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 A0A1W2PPL8 197 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 OR2T1O43869 369 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 CD53P19397 219 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 EFNB2P52799 333 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 SLC17A1Q14916 467 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 YIF1BQ5BJH7 314 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 C6orf183Q5T699 404 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 BCL2L15Q5TBC7 163 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 PLXDC2Q6UX71 529 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 BEST4Q8NFU0 473 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 OR2M3Q8NG83 312 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 ELP5Q8TE02 316 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 ST8SIA1Q92185 356 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 DDIT4LQ96D03 193 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 ST6GAL2Q96JF0 529 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 C4orf45Q96LM5 186 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 CHST11Q9NPF2 352 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 PLSCR3Q9NRY6 295 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 KLK11Q9UBX7 282 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 C19orf25Q9UFG5 118 aaPredicted RBP9.92□□□□□ -0.82
CUX1-212ENST00000547394 OR5V1Q9UGF6 321 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 ITGB1BP2Q9UKP3 347 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 FKBP7Q9Y680 259 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 V9GY05 133 aa9.92□□□□□ -0.82
CUX1-212ENST00000547394 C9J4A7 227 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 STK17BO94768 372 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 LDOC1O95751 146 aaPredicted RBP9.91□□□□□ -0.82
CUX1-212ENST00000547394 IGF2P01344 180 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 CFL1P23528 166 aaKnown RBP9.91□□□□□ -0.82
CUX1-212ENST00000547394 LCN1P31025 176 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 RFC3P40938 356 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 GLO1Q04760 184 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 IL11RAQ14626 422 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 ASPHD2Q6ICH7 369 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 SLC18B1Q6NT16 456 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 UNQ9370/PRO34162Q6UXP9 181 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 TIPARPQ7Z3E1 657 aaKnown RBP9.91□□□□□ -0.82
CUX1-212ENST00000547394 TMEM156Q8N614 296 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 DTWD2Q8NBA8 298 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 OR51A2Q8NGJ7 313 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 SYNPRQ8TBG9 265 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 SLC22A8Q8TCC7 542 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 STK35Q8TDR2 534 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 KIAA1143Q96AT1 154 aaPredicted RBP9.91□□□□□ -0.82
CUX1-212ENST00000547394 OR8B4Q96RC9 309 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 KCNJ15Q99712 375 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 NUDT15Q9NV35 164 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 MGAQ8IWI9 3026 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 ANXA2P2A6NMY6 339 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 GATBO75879 557 aaKnown RBP9.91□□□□□ -0.82
CUX1-212ENST00000547394 ANXA2P07355 339 aaKnown RBP9.91□□□□□ -0.82
CUX1-212ENST00000547394 GAAP10253 952 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 TCN2P20062 427 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 GIFP27352 417 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 RBMS1P29558 406 aaKnown RBP9.91□□□□□ -0.82
CUX1-212ENST00000547394 APOBEC1P41238 236 aaKnown RBP9.91□□□□□ -0.82
CUX1-212ENST00000547394 DNASE1L1P49184 302 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 HSF2Q03933 536 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 SLC36A2Q495M3 483 aa9.91□□□□□ -0.82
CUX1-212ENST00000547394 TMEM255AQ5JRV8 349 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms