RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 METTL2AQ96IZ6 378 aaKnown RBP3.41□□□□□ -1.86
SNHG1-220ENST00000544550 PBKQ96KB5 322 aa3.41□□□□□ -1.86
SNHG1-220ENST00000544550 HIST1H2AAQ96QV6 131 aa3.41□□□□□ -1.86
SNHG1-220ENST00000544550 PRPF18Q99633 342 aaKnown RBP3.41□□□□□ -1.86
SNHG1-220ENST00000544550 TAPBPLQ9BX59 468 aa3.41□□□□□ -1.86
SNHG1-220ENST00000544550 OR11A1Q9GZK7 315 aa3.41□□□□□ -1.86
SNHG1-220ENST00000544550 DPAGT1Q9H3H5 408 aa3.41□□□□□ -1.86
SNHG1-220ENST00000544550 NANOGQ9H9S0 305 aa3.41□□□□□ -1.86
SNHG1-220ENST00000544550 PATZ1Q9HBE1 687 aaKnown RBP3.41□□□□□ -1.86
SNHG1-220ENST00000544550 CYSLTR2Q9NS75 346 aa3.41□□□□□ -1.86
SNHG1-220ENST00000544550 ZCCHC3Q9NUD5 404 aaKnown RBP3.41□□□□□ -1.86
SNHG1-220ENST00000544550 PRDM4Q9UKN5 801 aa3.41□□□□□ -1.86
SNHG1-220ENST00000544550 FZR1Q9UM11 496 aa3.41□□□□□ -1.86
SNHG1-220ENST00000544550 FAF1Q9UNN5 650 aaPredicted RBP3.41□□□□□ -1.86
SNHG1-220ENST00000544550 RCE1Q9Y256 329 aa3.41□□□□□ -1.86
SNHG1-220ENST00000544550 RASD1Q9Y272 281 aa3.41□□□□□ -1.86
SNHG1-220ENST00000544550 JRKLQ9Y4A0 524 aa3.41□□□□□ -1.86
SNHG1-220ENST00000544550 NPTNQ9Y639 398 aa3.41□□□□□ -1.86
SNHG1-220ENST00000544550 TMED7-TICAM2A0A0A6YYA0 188 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 IGHV2-70DA0A0C4DH43 119 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 LCE6AA0A183 80 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 TCRBV9S1A1TA0A576 114 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 PLSCR5A0PG75 271 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 FAM159BA6NKW6 160 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 DUXAA6NLW8 204 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 F5H0A9 414 aaPredicted RBP3.4□□□□□ -1.87
SNHG1-220ENST00000544550 H0YL77 283 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 K7EIL1 84 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 TNFRSF13BO14836 293 aaPredicted RBP3.4□□□□□ -1.87
SNHG1-220ENST00000544550 EIF3HO15372 352 aaKnown RBP eCLIP3.4□□□□□ -1.87
SNHG1-220ENST00000544550 TBX19O60806 448 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 PIAS1O75925 651 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 OR4F21O95013 312 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 AKR7A3O95154 331 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 UBL3O95164 117 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 TNFRSF6BO95407 300 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 PTHP01270 115 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 IGHV2-70P01814 119 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 C2P06681 752 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 ENO1P06733 434 aaKnown RBP3.4□□□□□ -1.87
SNHG1-220ENST00000544550 SBK2P0C263 348 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 CHN1P15882 459 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 ZNF43P17038 809 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 CCNA2P20248 432 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 CD80P33681 288 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 PGM1P36871 562 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 TGFBR2P37173 567 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 FRKP42685 505 aaPredicted RBP3.4□□□□□ -1.87
SNHG1-220ENST00000544550 ZNF81P51508 661 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 TIRAPP58753 221 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 EMX1Q04741 257 aaPredicted RBP3.4□□□□□ -1.87
SNHG1-220ENST00000544550 CEACAM7Q14002 265 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 OR7A5Q15622 319 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 TSTQ16762 297 aaKnown RBP3.4□□□□□ -1.87
SNHG1-220ENST00000544550 CEACAM16Q2WEN9 425 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 FAM153CQ494X1 144 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 CASC10Q5T4H9 136 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 LIN54Q6MZP7 749 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 NOXRED1Q6NXP6 359 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 C6orf89Q6UWU4 347 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 UNQ6126/PRO20091Q6UXV3 157 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 BRD3OSQ6XYD6 125 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 LINGO2Q7L985 606 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 MAVSQ7Z434 540 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 ALPK2Q86TB3 2170 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 PTOV1Q86YD1 416 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 LDLRAD3Q86YD5 345 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 DDIASQ8IXT1 998 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 C1orf174Q8IYL3 243 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 ARFGAP2Q8N6H7 521 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 TMEM99Q8N816 258 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 FAM71CQ8NEG0 241 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 OR4F17Q8NGA8 305 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 ZNF519Q8TB69 540 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 ABHD5Q8WTS1 349 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 RAB40AQ8WXH6 277 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 MOAP1Q96BY2 351 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 ZNF524Q96C55 264 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 PPCDCQ96CD2 204 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 NEURL3Q96EH8 262 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 FAM120BQ96EK7 910 aaKnown RBP3.4□□□□□ -1.87
SNHG1-220ENST00000544550 DNAJA3Q96EY1 480 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 OTUB1Q96FW1 271 aaPredicted RBP3.4□□□□□ -1.87
SNHG1-220ENST00000544550 PLEKHA8Q96JA3 519 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 OR4F4Q96R69 305 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 ZNF382Q96SR6 550 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 BCL2L14Q9BZR8 327 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 SLC19A3Q9BZV2 496 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 TRIM15Q9C019 465 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 C1orf198Q9H425 327 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 TMEM165Q9HC07 324 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 A4GALTQ9NPC4 353 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 B3GAT2Q9NPZ5 323 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 EXOSC3Q9NQT5 275 aaKnown RBP3.4□□□□□ -1.87
SNHG1-220ENST00000544550 B3GNT2Q9NY97 397 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 SH3BP4Q9P0V3 963 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 RNF14Q9UBS8 474 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 TMED7Q9Y3B3 224 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 PCDHGB5Q9Y5G0 923 aa3.4□□□□□ -1.87
SNHG1-220ENST00000544550 CACNG2Q9Y698 323 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms