RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 SPPL2CQ8IUH8 684 aa8.1□□□□□ -1.11
VPS13D-212ENST00000543766 CMTM8Q8IZV2 173 aa8.1□□□□□ -1.11
VPS13D-212ENST00000543766 SLC34A3Q8N130 599 aa8.1□□□□□ -1.11
VPS13D-212ENST00000543766 LGI4Q8N135 537 aa8.1□□□□□ -1.11
VPS13D-212ENST00000543766 PQLC3Q8N755 202 aa8.1□□□□□ -1.11
VPS13D-212ENST00000543766 C11orf40Q8WZ69 217 aa8.1□□□□□ -1.11
VPS13D-212ENST00000543766 FGGYQ96C11 551 aa8.1□□□□□ -1.11
VPS13D-212ENST00000543766 SIGMAR1Q99720 223 aa8.1□□□□□ -1.11
VPS13D-212ENST00000543766 PECRQ9BY49 303 aa8.1□□□□□ -1.11
VPS13D-212ENST00000543766 PPP1R3EQ9H7J1 279 aa8.1□□□□□ -1.11
VPS13D-212ENST00000543766 LRIT1Q9P2V4 623 aa8.1□□□□□ -1.11
VPS13D-212ENST00000543766 ZNF629Q9UEG4 869 aaPredicted RBP8.1□□□□□ -1.11
VPS13D-212ENST00000543766 LIPGQ9Y5X9 500 aa8.1□□□□□ -1.11
VPS13D-212ENST00000543766 DIDO1Q9BTC0 2240 aaKnown RBP8.1□□□□□ -1.11
VPS13D-212ENST00000543766 LOC105369274A0A096LPK9 316 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 LOC102723532A0A0G2JNH3 316 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 A0A1W2PQH9 124 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 HLA-DOAP06340 250 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 UBBP0CG47 229 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 RCC1P18754 421 aaPredicted RBP8.09□□□□□ -1.11
VPS13D-212ENST00000543766 S1PR1P21453 382 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 AGTR1P30556 359 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 CD81P60033 236 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 YBX1P67809 324 aaKnown RBP8.09□□□□□ -1.11
VPS13D-212ENST00000543766 RAB32Q13637 225 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 EMC4Q5J8M3 183 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 NUFIP2Q7Z417 695 aaKnown RBP8.09□□□□□ -1.11
VPS13D-212ENST00000543766 OR4N4Q8N0Y3 316 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 SLC35G3Q8N808 338 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 OR9I1Q8NGQ6 314 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 OR9A4Q8NGU2 314 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 SPPL2BQ8TCT7 592 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 KISS1RQ969F8 398 aaPredicted RBP8.09□□□□□ -1.11
VPS13D-212ENST00000543766 RNF157Q96PX1 679 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 TXNRD2Q9NNW7 524 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 SLC6A13Q9NSD5 602 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 OR1A1Q9P1Q5 309 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 RBPJLQ9UBG7 517 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 OR52A1Q9UKL2 312 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 TMEM265A0A087WTH1 108 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 MAGEB17A8MXT2 336 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 ARPC2O15144 300 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 DFFBO76075 338 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 CDRT1O95170 752 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 OR5G3P0C626 314 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 FPR2P25090 351 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 BSGP35613 385 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 MAP2K3P46734 347 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 CRADDP78560 199 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 LYPLAL1Q5VWZ2 237 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 SPICQ8N5J4 248 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 FAM24BQ8N5W8 94 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 SLC35A4Q96G79 324 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 ACCSQ96QU6 501 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 PCGF1Q9BSM1 259 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 H2AFJQ9BTM1 129 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 RBM24Q9BX46 236 aaKnown RBP8.09□□□□□ -1.11
VPS13D-212ENST00000543766 QTRT1Q9BXR0 403 aaKnown RBP8.09□□□□□ -1.11
VPS13D-212ENST00000543766 RCC2Q9P258 522 aaKnown RBP8.09□□□□□ -1.11
VPS13D-212ENST00000543766 HES2Q9Y543 173 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 K7EN84 100 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 MT-ND4LP03901 98 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 SLC10A3P09131 477 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 CSNK2A2P19784 350 aaPredicted RBP8.09□□□□□ -1.11
VPS13D-212ENST00000543766 EPHA1P21709 976 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 BCKDHBP21953 392 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 BRS3P32247 399 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 LGALS7P47929 136 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 SLC6A8P48029 635 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 ERVFC1-1P60608 527 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 DYNLT1P63172 113 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 SH3BP2P78314 561 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 BCL2L15Q5TBC7 163 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 FAM126BQ8IXS8 530 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 OR52L2PQ8NGH6 319 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 OR13G1Q8NGZ3 307 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 NRGNQ92686 78 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 MCEEQ96PE7 176 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 OR2M2Q96R28 347 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 MICU1Q9BPX6 476 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 TMEM27Q9HBJ8 222 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 VNN3Q9NY84 501 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 HAO2Q9NYQ3 351 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 ZNF226Q9NYT6 803 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 PIM2Q9P1W9 311 aa8.09□□□□□ -1.11
VPS13D-212ENST00000543766 ARID1BQ8NFD5 2236 aaPredicted RBP8.09□□□□□ -1.12
VPS13D-212ENST00000543766 UPK3BL1B0FP48 263 aa8.08□□□□□ -1.12
VPS13D-212ENST00000543766 UPK3BL2E5RIL1 263 aa8.08□□□□□ -1.12
VPS13D-212ENST00000543766 TMPRSS11DO60235 418 aa8.08□□□□□ -1.12
VPS13D-212ENST00000543766 ANXA9O76027 345 aa8.08□□□□□ -1.12
VPS13D-212ENST00000543766 SEMA4FO95754 770 aa8.08□□□□□ -1.12
VPS13D-212ENST00000543766 HOXA5P20719 270 aa8.08□□□□□ -1.12
VPS13D-212ENST00000543766 FSHRP23945 695 aa8.08□□□□□ -1.12
VPS13D-212ENST00000543766 BCL6P41182 706 aa8.08□□□□□ -1.12
VPS13D-212ENST00000543766 EPHA4P54764 986 aa8.08□□□□□ -1.12
VPS13D-212ENST00000543766 SLC35A2P78381 396 aa8.08□□□□□ -1.12
VPS13D-212ENST00000543766 RBBP4Q09028 425 aa8.08□□□□□ -1.12
VPS13D-212ENST00000543766 DOC2BQ14184 412 aa8.08□□□□□ -1.12
VPS13D-212ENST00000543766 SNRNP35Q16560 246 aaKnown RBP8.08□□□□□ -1.12
VPS13D-212ENST00000543766 ITPRIPL2Q3MIP1 535 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms