RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 BMP4P12644 408 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 NR2C1P13056 603 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 NPR2P20594 1047 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 CALB2P22676 271 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 CDAP32320 146 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 PPOXP50336 477 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 HMGA2P52926 109 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 ERVK-25P63136 954 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 SNTB2Q13425 540 aaKnown RBP12.24□□□□□ -0.45
USP28-209ENST00000540925 RAB35Q15286 201 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 MESTQ5EB52 335 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 FAM27BQ5VT28 67 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 LCN8Q6JVE9 175 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 CLEC9AQ6UXN8 241 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 SLC16A14Q7RTX9 510 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 PAQR4Q8N4S7 273 aaPredicted RBP12.24□□□□□ -0.45
USP28-209ENST00000540925 OR52J3Q8NH60 311 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 RSRC1Q96IZ7 334 aaKnown RBP12.24□□□□□ -0.45
USP28-209ENST00000540925 SORCS2Q96PQ0 1159 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 REG4Q9BYZ8 158 aa12.24□□□□□ -0.45
USP28-209ENST00000540925 SLC22A23A1A5C7 686 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 SMAD7O15105 426 aaKnown RBP12.23□□□□□ -0.45
USP28-209ENST00000540925 AHCYL1O43865 530 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 NDUFB2O95178 105 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 SNAP29O95721 258 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 TXNDC12O95881 172 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 FABP3P05413 133 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 GLRXP35754 106 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 EVX1P49640 407 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 NUDT6P53370 316 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 SMIM11AP58511 58 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 DSCR9P59020 149 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 SNRPD2P62316 118 aaKnown RBP12.23□□□□□ -0.45
USP28-209ENST00000540925 MXRA7P84157 204 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 MS4A2Q01362 244 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 CD47Q08722 323 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 SLC36A2Q495M3 483 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 MTX3Q5HYI7 312 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 KRT80Q6KB66 452 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 VHLLQ6RSH7 139 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 RRM2BQ7LG56 351 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 ZNF525Q8N782 197 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 CPEB3Q8NE35 698 aaKnown RBP12.23□□□□□ -0.45
USP28-209ENST00000540925 SLC30A7Q8NEW0 376 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 Q96M85 177 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 RBP7Q96R05 134 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 C1orf21Q9H246 121 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 MUC13Q9H3R2 512 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 C1orf198Q9H425 327 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 TAS2R1Q9NYW7 299 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 FBXO9Q9UK97 447 aaPredicted RBP12.23□□□□□ -0.45
USP28-209ENST00000540925 RTTNQ86VV8 2226 aa12.23□□□□□ -0.45
USP28-209ENST00000540925 PRSS37A4D1T9 235 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 LY6HO94772 140 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 GADD45GO95257 159 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 SCG5P05408 212 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 FPR3P25089 353 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 SDHAP31040 664 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 SPIBQ01892 262 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 TRIM25Q14258 630 aaKnown RBP12.22□□□□□ -0.45
USP28-209ENST00000540925 TMEM53Q6P2H8 277 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 CYP2R1Q6VVX0 501 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 ZDHHC21Q8IVQ6 265 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 SVOPLQ8N434 492 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 C10orf105Q8TEF2 133 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 NSMAFQ92636 917 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 MRPL24Q96A35 216 aaKnown RBP12.22□□□□□ -0.45
USP28-209ENST00000540925 MRPL37Q9BZE1 423 aaKnown RBP12.22□□□□□ -0.45
USP28-209ENST00000540925 VSX1Q9NZR4 365 aaPredicted RBP12.22□□□□□ -0.45
USP28-209ENST00000540925 SLC7A8Q9UHI5 535 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 PRPF19Q9UMS4 504 aaKnown RBP12.22□□□□□ -0.45
USP28-209ENST00000540925 CMAHPQ9Y471 501 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 SVEP1Q4LDE5 3571 aa12.22□□□□□ -0.45
USP28-209ENST00000540925 TEX13CA0A0J9YWL9 993 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 UNC119BA6NIH7 251 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 VWC2LB2RUY7 222 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 H7C1C5 153 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 ICMTO60725 284 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 CST2P09228 141 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 APEHP13798 732 aaKnown RBP12.21□□□□□ -0.45
USP28-209ENST00000540925 CTLA4P16410 223 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 ZNF32P17041 273 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 PCSK6P29122 969 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 RRM2P31350 389 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 RPL4P36578 427 aaKnown RBP12.21□□□□□ -0.45
USP28-209ENST00000540925 GSSP48637 474 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 LCN6P62502 163 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 KRR1Q13601 381 aaKnown RBP12.21□□□□□ -0.45
USP28-209ENST00000540925 ENDOGQ14249 297 aaKnown RBP12.21□□□□□ -0.45
USP28-209ENST00000540925 PABPC1L2AQ5JQF8 200 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 GPR139Q6DWJ6 353 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 ZNF770Q6IQ21 691 aaPredicted RBP12.21□□□□□ -0.45
USP28-209ENST00000540925 C1orf94Q6P1W5 598 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 SMARCD3Q6STE5 483 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 DPY19L2P2Q6ZN68 376 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 PTCHD4Q6ZW05 846 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 Q71RC1 249 aaPredicted RBP12.21□□□□□ -0.45
USP28-209ENST00000540925 LRRC18Q8N456 261 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 MAPK1IP1LQ8NDC0 245 aa12.21□□□□□ -0.45
USP28-209ENST00000540925 OR4C15Q8NGM1 316 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms